LOCUS       NM_203325                789 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus major urinary protein 5 (Mup5), mRNA.
ACCESSION   NM_203325 XM_216423
VERSION     NM_203325.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Meslin,C., Brimau,F., Nagnan-Le Meillour,P., Callebaut,I.,
            Pascal,G. and Monget,P.
  TITLE     The evolutionary history of the SAL1 gene family in eutherian
            mammals
  JOURNAL   BMC Evol Biol 11, 148 (2011)
   PUBMED   21619679
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Saito,K., Nishikawa,J., Imagawa,M., Nishihara,T. and Matsuo,M.
  TITLE     Molecular evidence of complex tissue- and sex-specific mRNA
            expression of the rat alpha(2u)-globulin multigene family
  JOURNAL   Biochem Biophys Res Commun 272 (2), 337-344 (2000)
   PUBMED   10833415
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Mar 27, 2023 this sequence version replaced NM_203325.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB039827.1, SRR26643295.21526.1
                                           [ECO:0000332]
            RNAseq introns              :: partial sample support SAMEA5760476,
                                           SAMEA5760494 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-138               JAXUCZ010000005.1  79999558-79999695   c
            139-272             JAXUCZ010000005.1  79999116-79999249   c
            273-346             JAXUCZ010000005.1  79998813-79998886   c
            347-457             JAXUCZ010000005.1  79997971-79998081   c
            458-559             JAXUCZ010000005.1  79997522-79997623   c
            560-605             JAXUCZ010000005.1  79997309-79997354   c
            606-789             JAXUCZ010000005.1  79996293-79996476   c
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q24"
     gene            1..789
                     /gene="Mup5"
                     /gene_synonym="PGCL6"
                     /note="major urinary protein 5"
                     /db_xref="GeneID:298107"
                     /db_xref="RGD:735107"
     exon            1..138
                     /gene="Mup5"
                     /gene_synonym="PGCL6"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..585
                     /gene="Mup5"
                     /gene_synonym="PGCL6"
                     /note="alpha-2u globulin PGCL6; alpha-2u globulin PGCL5"
                     /codon_start=1
                     /product="major urinary protein 5 precursor"
                     /protein_id="NP_976070.2"
                     /db_xref="GeneID:298107"
                     /db_xref="RGD:735107"
                     /translation="MKLLLLLLCLGLTLVCGHEEEASFERGNLDVDKLNGDWFSIVMA
                     SDKREKIEENGSMRVFVQHIDVLENSLGFKFHIKVNGKCRELYLVAYKTPKDGKYFVE
                     YDGGNTFNILKTDYDRYVMFHLVNFKDGETFQLMNLLGRTKDLSSDIKEKFAKLCVAH
                     GITRENIIDVTKTDRCLQARG"
     exon            139..272
                     /gene="Mup5"
                     /gene_synonym="PGCL6"
                     /inference="alignment:Splign:2.1.0"
     exon            273..346
                     /gene="Mup5"
                     /gene_synonym="PGCL6"
                     /inference="alignment:Splign:2.1.0"
     exon            347..457
                     /gene="Mup5"
                     /gene_synonym="PGCL6"
                     /inference="alignment:Splign:2.1.0"
     exon            458..559
                     /gene="Mup5"
                     /gene_synonym="PGCL6"
                     /inference="alignment:Splign:2.1.0"
     exon            560..605
                     /gene="Mup5"
                     /gene_synonym="PGCL6"
                     /inference="alignment:Splign:2.1.0"
     exon            606..789
                     /gene="Mup5"
                     /gene_synonym="PGCL6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gattgtcccg acagagaggc aattctattc cctaccaaca tgaagctgtt gctgctgctg
       61 ctgtgtctgg gcctgaccct ggtctgtggc catgaagaag aagctagttt cgagagaggg
      121 aacctcgatg tggacaagct caatggggat tggttttcta ttgtcatggc ctctgacaaa
      181 agagaaaaga tagaagagaa tggcagcatg agagtttttg tgcagcacat cgatgtcttg
      241 gagaattcct taggcttcaa gtttcatatt aaggtaaatg gaaagtgcag ggaactctat
      301 ttggttgcct acaaaacgcc aaaggatggc aaatattttg ttgaatatga cggagggaat
      361 acatttaata tacttaagac agactatgac agatatgtca tgtttcatct cgttaatttc
      421 aaggacgggg aaaccttcca gctgatgaat ctcttaggca gaacaaagga tctgagttca
      481 gatatcaagg aaaagtttgc aaaactatgt gtggcgcatg gaatcactag ggagaatatc
      541 attgacgtaa ccaagactga tcgctgtctc caggcccgag gttgaagaaa ggcctgagcc
      601 tccagtgctg agtggagact tctcaccagg actccagcat caccatttcc tgtctatgga
      661 gcatcctgag ccaaattctg cgatttgatt tccatcttgt gtcacagaaa agtgcaatcc
      721 tggtctctcc agcgtcttcc ctagttaccc aggacaacac atcgagaatt aaaagctttc
      781 ttaaatttc
//
