LOCUS       XM_039098009            4431 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus mucin 6, oligomeric mucus/gel-forming
            (Muc6), mRNA.
ACCESSION   XM_039098009
VERSION     XM_039098009.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098009.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4431
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4431
                     /gene="Muc6"
                     /note="mucin 6, oligomeric mucus/gel-forming; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 2 Proteins, and 16% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:282586"
                     /db_xref="RGD:628826"
     CDS             1..4350
                     /gene="Muc6"
                     /codon_start=1
                     /product="mucin-6"
                     /protein_id="XP_038953937.1"
                     /db_xref="GeneID:282586"
                     /db_xref="RGD:628826"
                     /translation="MLRVGHLLLLLLFRGPLINASCLTGARTGDATDSDSEDNLQSSP
                     EKGWCSMWGAGHFSTFDGHQYNFKGMCNYVFTATCGDDLPTTFSIQLRRDGDGNISRI
                     IIELGASVVTVNKETISVRDIGVVSLPYTSNGLQITPYGQSVQLVAKQLELELVIMWG
                     PDAHLMVLVEKKYMGKLCGLCGNFDGKIDNEFLSEDGKLLEPHKYATLQKLDDPNEIC
                     AHEAIPSPSILKTRYAHICNQLLTLVSPGCDVPKETLMLSCQEDMADCAQPGQPNCSC
                     ATLSEYSRRCSMAGQPVRNWRTPSLCPMSQCPANQVYQECGEVCVKTCSNPQHSCSSF
                     CTFGCFCPHGTLLDDISGNHSCVPVNQCPCMLNGMVYGPGEITRTACQTCQCTMGHWT
                     CTKQPCPGHCSLEGGSFVTTFDARPYRFHGTCTYTLLQSPQLPNEGTLMAVYDKSGYS
                     HSETSLESIIYLSKKDKIVISEDEVITNNGDTKLLPYKTHNITIFRQTSTHLQMATTF
                     GLQIMFQMQPVFQAYITVGPQFKGQTRGLCGNFNGDTTDDFTTSMGIDEGTASLFVDS
                     WRAGNCPAALERETDPCSMSQLNKVCAETHCSMLLKKGSVFEKCHNVVNPQPFYKRCV
                     YQACNYEETFPHICSALGAYAHACSSRGVLLWGWRNSVDNCTVPCSGNRTFSYDSKAC
                     DRTCLSLSDRETECHASPVPVDGCNCPEGTYLNHKAECVHKTQCPCLLDSHKFVQADQ
                     STMINGVICYCINGRLSCPRQAEMFFASCPEPKTFQSCSQSSEDKFGAACAPTCQMLA
                     TGTACVPTKCESGCVCPKGLYENSDGQCVPAEECPCDYAGTSYPGGSELHTDCKTCTC
                     SQGRWTCQLSTQCPSTCVLYGEGHIITFDGQRFVFDGNCEYTLATDDCGANSSQPTFK
                     VLTENVICGKSGVTCSRAIKISLGGLSITMADGNYTVSGEEPLVHLQVKPSPLNLVLD
                     IDIPGRLNLTLMWNKHMSVSMKIRRETQDPLCGLCGNSNGNMKDDFETRSKYVASNEL
                     EFVNSWKESPLCGDASYAVDPCSLNTFRRSWAERKCNIINSQTFAACHSKVYHLPYYE
                     ACVHDACGCDTGGDCECLCDAVAAYAKACLDKGVCVDWRTPDFCPIYCDFYNTHTLVG
                     DNGYQIAQHNCTWHYQPCLCPGSLGSFPDTNTEGCYNCSQNEYFDHKEGTCVPCAPPT
                     TTPPPTTTGSQPTTATPISTEFHSSSSTSTPVGPSYLPGLPTPPPSAPSSTEEGTDWT
                     TPKKSTVSSGEYPQTTVATRPLTSPLSPTSIPKSTPTRPTVTEATSKPTASSLSSSTK
                     TTAEFTESTTVTLLTSVMTGMSTSQVTQTSEASWYQPTAHICVPEPQYYSQWKLLSFY
                     PNIALQSGLLGLLTTRRSWGLQLARRGAPDYLPGLCGKCDSNSLPGFLCLLCQYQYGH
                     PAAGDQLWLLSAP"
ORIGIN      
        1 atgctcaggg tcggacacct gctgctgttg ctgctcttca ggggacccct aatcaatgct
       61 tcctgcctta caggtgcccg gactggagat gccacagact ccgactccga ggataacctg
      121 caatcctctc cagaaaaggg ttggtgctcc atgtggggag ctggccactt ttccaccttt
      181 gatggccatc agtataattt caaagggatg tgtaattatg tctttacggc cacctgcggg
      241 gatgacttgc ccaccacctt tagcatccag ttgcggagag atggggatgg gaacatctcc
      301 cggatcatca tagaactggg agcctctgtg gttactgtga acaaagaaac catctctgtc
      361 agggacattg gggttgttag cctgccctac accagcaatg gcctccagat cacaccatac
      421 ggccagagcg tgcagctggt ggccaagcag ctggagctgg agctagtcat catgtggggt
      481 ccagacgccc accttatggt cctggtagag aagaagtaca tgggcaagct atgtggactg
      541 tgtgggaact ttgatggaaa gatagacaat gaatttctca gtgaggatgg caaacttctg
      601 gaaccccata agtacgctac acttcagaag ctagatgacc ccaatgagat ctgtgcccat
      661 gaagctatcc ccagtcccag catcctgaag accagatacg cacatatctg caaccagtta
      721 ctgaccctgg tgtcccctgg gtgtgacgtg ccaaaggaga cactgatgtt gagctgccag
      781 gaagacatgg ctgactgtgc ccagccaggc cagcccaact gcagctgcgc cacactgtct
      841 gagtactccc gccgatgcag catggctggc cagcctgtcc gaaactggag gacccccagc
      901 ctctgcccca tgagccagtg cccggccaac caagtgtacc aggagtgtgg tgaggtctgc
      961 gtcaagactt gctccaaccc acagcacagc tgctccagct tctgcacctt cggctgcttc
     1021 tgcccccatg gtacactgct tgacgatata tctggaaacc actcctgtgt gccagtcaac
     1081 cagtgccctt gcatgctcaa tggtatggtc tatggcccgg gggagatcac aaggacagct
     1141 tgccaaacct gccagtgtac catgggccac tggacctgta caaagcagcc gtgtcctggc
     1201 cactgctccc tagaaggtgg ttcctttgtc acaacattcg acgccagacc ctaccgtttc
     1261 catggcacct gtacctacac tcttctccag agcccacagc ttcccaatga aggcaccctc
     1321 atggctgtgt atgacaagtc gggttactcg cactcagaga cctccttaga gtccatcatc
     1381 tacctgtcca agaaggacaa aattgtcatc tcagaggatg aagtgatcac caacaacggg
     1441 gacaccaaat tgctgccata caagacacac aacatcacca tcttcaggca gacatctacc
     1501 cacctccaga tggctaccac cttcgggcta caaattatgt tccagatgca gcctgtcttc
     1561 caggcgtaca tcacagtcgg gccccagttc aaaggccaga ccagagggct ctgcggaaat
     1621 ttcaacggag acacgacaga tgacttcaca accagcatgg gtattgacga aggcactgcc
     1681 tcactctttg tggattcctg gcgtgcgggg aactgtccag ctgccctaga gcgtgagacg
     1741 gacccctgct ccatgagcca gctcaacaag gtgtgtgcag agacccactg ttccatgctg
     1801 ctgaagaaag gcagtgtgtt tgagaagtgc cacaatgtgg tgaaccccca gcccttctac
     1861 aagagatgtg tgtaccaggc ctgcaactat gaggagacct tccctcacat ctgttctgcg
     1921 ctgggggcct atgcccatgc ctgctcctcc cgtggcgtcc tgctctgggg ctggaggaac
     1981 agtgtggaca actgcactgt gccgtgctct ggcaaccgta cattcagcta tgatagcaag
     2041 gcctgtgacc gtacctgcct gtctctgtcg gaccgtgaga cagagtgtca cgcgagtcct
     2101 gtgccggtgg atggctgcaa ctgtcctgag ggcacctacc tgaaccacaa ggcagaatgt
     2161 gtgcacaaaa cccagtgtcc ctgtctgctg gacagccaca agtttgtcca ggctgatcag
     2221 tcaaccatga tcaacggggt catatgctac tgcatcaatg ggcgtctgag ctgtccacgg
     2281 caagcagaga tgttctttgc atcctgccca gagcccaaga ccttccagtc ctgcagccag
     2341 tcgtcagagg acaagtttgg agctgcatgt gcccccacgt gccagatgct ggccacaggc
     2401 actgcctgtg tacccaccaa gtgcgaatcc ggctgcgtct gtcctaaggg actctatgaa
     2461 aacagtgacg ggcagtgtgt gcccgcagag gaatgcccat gtgactatgc agggacatcc
     2521 taccctggtg gttctgagct ccatacagac tgtaagacct gcacctgctc gcagggaagg
     2581 tggacctgcc agcttagcac ccagtgtcca tccacctgtg tcctctacgg cgaaggccac
     2641 atcataactt ttgatggaca acgctttgtg tttgacggca actgcgaata cacgctggcc
     2701 acggatgact gtggtgccaa cagctcacag cctaccttca aggtcctgac agagaacgtc
     2761 atctgtggga agtcgggggt cacctgctcc agagccatca agatctccct aggtgggcta
     2821 tccatcacaa tggcagacgg taactacaca gtcagtgggg aagaacccct ggtgcatcta
     2881 caagtgaagc ctagccccct gaatcttgtg ctggacatag acatccctgg aaggctcaac
     2941 ctgacactta tgtggaacaa gcacatgagt gtctctatga agatccgccg tgagacccag
     3001 gaccccctct gtggcttgtg tggcaactcc aatgggaaca tgaaagatga cttcgaaaca
     3061 cgcagcaagt atgtggcgtc caatgagctg gagtttgtga actcgtggaa ggaaagccca
     3121 ctgtgtgggg atgcaagtta cgcggtggat ccctgcagcc tgaatacctt ccggcgctcg
     3181 tgggctgagc gcaaatgcaa cattatcaac agccagacct ttgccgcttg ccacagcaag
     3241 gtataccacc tgccctacta tgaggcctgc gtgcatgatg cctgtgggtg cgacacaggc
     3301 ggggactgcg agtgtctgtg tgatgcagtg gctgcctatg ccaaggcctg tctggacaag
     3361 ggcgtgtgtg tggactggag gaccccagac ttctgcccca tctactgtga cttctacaac
     3421 acccacacac tggtgggtga caatggatac cagatagctc agcacaactg cacgtggcac
     3481 taccagccct gtctctgccc tggcagcctg ggaagcttcc cggatacaaa cactgaaggc
     3541 tgttacaact gctcccagaa tgagtacttc gaccacaaag aagggacctg tgtaccctgt
     3601 gcaccaccta ctaccacacc accaccaacc accacaggtt cacagcctac tactgcaacc
     3661 cccatcagca ccgagttcca cagttccagc tctacaagca cacctgtggg cccctcctac
     3721 ttgccaggtc ttccaacccc accgccttca gccccatcct ccactgagga aggaacagac
     3781 tggaccactc caaagaaatc cacagtctcc tcaggagaat acccccaaac cactgtggct
     3841 accagaccac tgacatcacc tttgtctcct acgtctatac cgaagtcaac acccacaagg
     3901 cccacagtga cagaggcaac atccaaaccc acagcatctt ccctcagctc atccacaaag
     3961 accacagccg agttcacaga gagtaccaca gtgacactgc taacctcagt aatgactggg
     4021 atgtctacca gccaagtgac gcagacttct gaggcctcct ggtaccagcc cactgcccac
     4081 atctgtgttc ctgagccgca gtactactcc cagtggaagc tcctctcctt ctaccccaac
     4141 atcgccctcc aatctgggct cctcggtctc ctcaccaccc gcagatcctg gggcctgcag
     4201 cttgcaagaa gaggagcacc agattaccta ccagggctgt gtggcaaatg tgactctaac
     4261 tcgttgccag ggtttctgtg cctcctctgt cagtatcaat atggacaccc tgcagctgga
     4321 gaccagctgt ggctgctgtc agccccttag tacctacaag aagcaactct tgctgccctg
     4381 cccagatccc aatgcaccag gtcagcagct cacactcact ctccaagtgt t
//
