LOCUS       XM_039090064            2313 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus mucin 3 like 1 (Muc3l1), mRNA.
ACCESSION   XM_039090064
VERSION     XM_039090064.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039090064.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2313
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2313
                     /gene="Muc3l1"
                     /note="mucin 3 like 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 EST, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 20 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:120095908"
                     /db_xref="RGD:41045133"
     CDS             160..1170
                     /gene="Muc3l1"
                     /codon_start=1
                     /product="mucin-3B-like"
                     /protein_id="XP_038945992.1"
                     /db_xref="GeneID:120095908"
                     /db_xref="RGD:41045133"
                     /translation="MEVAVEQEFSPDLEDNTSKAYRDFSNAFQGQMQKIYQAVQGFQG
                     VEILSLRRGSIVVDYRVLLKLSFSPQLKSDYEKVKTMLKEELQSASQDGDSCQNNQTL
                     CFKSDSIKVNNGTEKELSPEAICHRTAPKDFEEHYFPLVELSRLRCVTNCTPGLNGTI
                     NCNQGQCFLQKSGPTCRCFSTDTYWVSGPRCEVTVDWRVLVGGLVGAAILLLLLLVAL
                     SIWVAHSRARGKDRQLSGRTWTKDRKWFEIWDEDIAGTFSKRGFQDAPPVTNENFYVA
                     LEKVDTNMAVHIQRPELTLSPSAAIASPSPPPSSPSPSPSSSSSSSSSSSSPSSPPSS
                     SF"
ORIGIN      
        1 tttcttctcc tttcccggta tacttcagtt aagtcttcag atatgatgga gaaagagaag
       61 agaatcctgt gggtgagagc tgtggcggac gtgggcagat gaggaagtag tcagaactag
      121 gtcttccatg atacagacac agtggacact gaagtgggca tggaggtagc tgtggagcag
      181 gaattctctc cggacctcga agacaacact tccaaggcct acagagactt cagcaatgcc
      241 ttccagggtc agatgcagaa gatttaccag gccgttcaag gcttccaggg tgtggaaatc
      301 ctgtccttga ggaggggcag tattgtggta gactaccggg tgctgctgaa gctgtccttc
      361 agcccccaac tgaagagcga ctatgagaag gtgaagacaa tgctgaagga ggagctgcag
      421 agcgccagtc aagatggtga cagctgtcag aacaaccaga ccctgtgttt taagtctgac
      481 tccatcaaag tgaacaatgg cactgagaaa gagctgagcc cagaagccat ctgtcaccga
      541 actgccccca aggactttga ggaacactat tttcctttgg tggagctgag caggctccgc
      601 tgcgtcacca attgcacacc tggattgaat ggcaccatca attgcaacca gggacagtgt
      661 tttctgcaga agagtggtcc aacctgtcgc tgcttttcca cagacacata ctgggtctca
      721 gggccacgct gtgaggtgac ggttgactgg agggtgttgg ttggaggcct ggtgggggct
      781 gccatattgc tgctgctgtt actggtggcc ttaagtatct gggtggcaca ttctcgggca
      841 agaggcaagg accgccagct ctcgggcagg acctggacca aggacaggaa atggtttgag
      901 atctgggatg aagacatcgc ggggactttt tccaaaaggg gcttccagga tgccccacca
      961 gtcactaatg aaaacttcta cgtcgccttg gagaaggtgg ataccaacat ggcggttcac
     1021 atccagagac ccgagttgac tttatcaccc tcagcagcaa tagcatcacc atcaccacca
     1081 ccatcatcac catcaccatc accatcatca tcatcttcat catcttcatc atcatcatca
     1141 ccatcatcac caccatcatc atcattctga gcccttgaag ggcctctttt gtgcccctac
     1201 tggagctgta ggcctgagcc cattatggaa gaattagttc cagtgcccac acagcccagg
     1261 ttccagtgtt cttgggggcg aggggaatcc tgtttccttg acctcccatc cttctctttg
     1321 tttggctgaa acccacttgg agaacataga tctatgctct tcactccagt atggtgggca
     1381 gggcagtctc agtctcttgc ctcagtcgcc tcatctgtga aatgggtgtg atgcacttaa
     1441 taccattacc ctaaaactta gcacaatcac ttcacatgtg cttggttgat ttttggggga
     1501 cttttacatt ctcctgttgc ttttctcgga ttctctctcc cacctgactt tactccttct
     1561 ttgtctcagg tctccattgt tcctttgaga cagagtttaa cacggtgctg gggatggaag
     1621 ctaggattct gtgcatgcta ggcaagggcc ctacccgctg agccacatcc ctcagtcatt
     1681 ggctcttact tttggattta ctctctatcg ccatcctggc ttactggcta atccttcatc
     1741 ttgcactctt gcacgcatag gtaacctgac actccccccc tccccccagg gcagcatgag
     1801 tcacaccccc actctctcct ctggaactct ctaagtagct gagcatgacg gaccttgatt
     1861 ccttgcccct cttatcctgc tcccttcttc atccctgcag ctatccccaa atcccacctc
     1921 gttcccatga ctccctgttc ctaggtcctc atacagccag ggtgtcatgg ggtccccggt
     1981 taatgcttcc cacgctccta cttcccgacc ccaaggttcc cacctccttc ctcttttcac
     2041 ccttggcgat tttaagtcct aggcaggggt cgggcatgga tttgtcccag gatgagcagt
     2101 caggagcctg tctccttatc tcctttaccg ttgtcaccac ctcttccacg acgtctcttc
     2161 cttcgcttcc tgtctgtcac tgttgtgacc tcagaccctg gaacccttaa tctcctttgc
     2221 cagaacagat ctggggacag gaagtcagcg agtgtctcga tccccatata catccaataa
     2281 atacatttac tgtaaataaa actgctctct ccg
//
