LOCUS       XM_039090116            1125 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus mucin 3 (Muc3), mRNA.
ACCESSION   XM_039090116
VERSION     XM_039090116.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 2% of CDS bases
            frameshifts          :: corrected 5 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-10                JACYVU010000227.1  796991-797000
            11-205              JACYVU010000227.1  797053-797247
            206-291             JACYVU010000227.1  798972-799057
            292-292             "N"                1-1
            293-327             JACYVU010000227.1  799058-799092
            328-363             JACYVU010000227.1  799436-799471
            364-365             "NN"               1-2
            366-386             JACYVU010000227.1  799472-799492
            387-432             JACYVU010000227.1  800607-800652
            433-538             JACYVU010000227.1  800654-800759
            539-610             JACYVU010000227.1  801728-801799
            611-630             JACYVU010000227.1  802288-802307
            631-631             "N"                1-1
            632-735             JACYVU010000227.1  802308-802411
            736-736             "N"                1-1
            737-776             JACYVU010000227.1  802412-802451
            777-938             JACYVU010000227.1  805014-805175
            939-1036            JACYVU010000227.1  805355-805452
            1037-1110           JACYVU010000227.1  806234-806307
            1111-1125           JACYVU010000227.1  806650-806664
FEATURES             Location/Qualifiers
     source          1..1125
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1125
                     /gene="Muc3"
                     /note="mucin 3; The sequence of the model RefSeq
                     transcript was modified relative to its source genomic
                     sequence to represent the inferred CDS: inserted 5 bases
                     in 4 codons; deleted 1 base in 1 codon; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein, and 19% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:687030"
                     /db_xref="RGD:3124"
     CDS             1..1125
                     /gene="Muc3"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 5 bases in 4 codons;
                     deleted 1 base in 1 codon; substituted 1 base at 1 genomic
                     stop codon"
                     /codon_start=1
                     /transl_except=(pos:649..651,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: mucin-17"
                     /protein_id="XP_038946044.1"
                     /db_xref="GeneID:687030"
                     /db_xref="RGD:3124"
                     /translation="MSSLNCLNGGYWSGVMCVCPNGFSGDRCQNRVPVVDCQNGGTWD
                     GLKCQCTGLFYGPRCEEVMESVEIKPTVSAAVEVSVTVTSQEYSNELQDRNSTXFRNF
                     NETFTKQMAIIYAGIPSMKXIIIKNLSKGSIVVDYDVILKAQNTPGFDSTLDNIVSNL
                     NKNQNATTVQVQDDNNTCSALLCFNSTATRVQTNVTVVSDNLEEVCKKEAXEDFAKXS
                     PWGSRTISWYCVTPCSSGYSTPRNCSYXKCQLQRSGPRACDCLSTDTHWYSGENCDWG
                     IQKSLVYGLVGAGVAVLLVILVILAVFSVHYRRDAQRQKSRVSEMYRWGEEEGRASPG
                     TFHNIGFEAQQENDISLDSVYSNFQPSLSHINPEGKFQGT"
ORIGIN      
        1 atgtcaagtt tgaattgcct gaacggaggg tactggtcag gtgtgatgtg cgtctgcccc
       61 aatggcttct cgggggatcg ctgtcagaac agagtccccg tggtcgactg ccagaacgga
      121 ggcacgtggg atggactcaa atgtcagtgt actggcctct tctatggccc aaggtgtgag
      181 gaagtgatgg agagcgtaga gataaagccg acggtctctg cagctgtgga agtgagtgtg
      241 acagtaacca gtcaagaata tagtaatgag ctacaggacc gaaactccac angattccgt
      301 aacttcaatg agacattcac aaagcagatg gcgataattt atgctggtat cccgagtatg
      361 aagnngatta tcatcaaaaa tctgagcaaa ggcagtatcg tggtggatta tgatgtcatc
      421 ctgaaggccc agaacacccc aggattcgac agcaccttag ataacatcgt cagtaacctg
      481 aacaaaaatc agaatgcgac aacagttcaa gtacaagatg acaataatac ctgttcagcc
      541 ttactgtgtt tcaactcgac tgccacccgg gtgcaaacca atgttacagt agtcagtgac
      601 aatcttgagg aggtgtgcaa gaaagaggct ngagaggact ttgcaaagta gtcaccctgg
      661 ggctcaagga caataagttg gtactgtgtc acgccttgtt catcaggcta cagtactcca
      721 agaaactgca gctatngcaa atgtcagttg cagcgaagtg gaccccgtgc ctgtgactgc
      781 ttgtccacgg atactcactg gtacagcggt gaaaactgcg actggggcat ccagaaaagt
      841 ctggtgtatg ggctcgtggg agccggggtg gcagtgctgt tggtgattct tgtgatcctc
      901 gctgtgttct ccgtccacta cagaagagat gcacaaaggc aaaagtccag agtgtctgag
      961 atgtacaggt ggggtgaaga ggaaggcaga gcatctcccg gaaccttcca caacattggc
     1021 tttgaggcac aacaagaaaa cgatatatcc ttggactctg tgtacagcaa cttccagccc
     1081 tccctaagcc acataaaccc tgaaggaaag ttccagggaa catga
//
