LOCUS       NM_001399523            1954 bp    mRNA    linear   ROD 22-SEP-2024
DEFINITION  Rattus norvegicus mitochondrial translation release factor 1
            (Mtrf1), mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_001399523 XM_003751518
VERSION     NM_001399523.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1954)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 1954)
  AUTHORS   Mootha,V.K., Bunkenborg,J., Olsen,J.V., Hjerrild,M.,
            Wisniewski,J.R., Stahl,E., Bolouri,M.S., Ray,H.N., Sihag,S.,
            Kamal,M., Patterson,N., Lander,E.S. and Mann,M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            On Jan 10, 2022 this sequence version replaced XM_003751518.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.978703.1,
                                           SRR26360190.1081034.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-251               JAXUCZ010000015.1  61185999-61186249
            252-361             JAXUCZ010000015.1  61188188-61188297
            362-787             JAXUCZ010000015.1  61189856-61190281
            788-879             JAXUCZ010000015.1  61191095-61191186
            880-961             JAXUCZ010000015.1  61192900-61192981
            962-1069            JAXUCZ010000015.1  61193156-61193263
            1070-1242           JAXUCZ010000015.1  61197432-61197604
            1243-1360           JAXUCZ010000015.1  61198892-61199009
            1361-1497           JAXUCZ010000015.1  61202426-61202562
            1498-1596           JAXUCZ010000015.1  61206919-61207017
            1597-1954           JAXUCZ010000015.1  61213421-61213778
FEATURES             Location/Qualifiers
     source          1..1954
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15q12"
     gene            1..1954
                     /gene="Mtrf1"
                     /note="mitochondrial translation release factor 1"
                     /db_xref="GeneID:686234"
                     /db_xref="RGD:1584329"
     exon            1..251
                     /gene="Mtrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            252..361
                     /gene="Mtrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            362..787
                     /gene="Mtrf1"
                     /inference="alignment:Splign:2.1.0"
     CDS             370..1710
                     /gene="Mtrf1"
                     /note="mitochondrial translational release factor 1;
                     peptide chain release factor 1, mitochondrial"
                     /codon_start=1
                     /product="peptide chain release factor 1, mitochondrial
                     precursor"
                     /protein_id="NP_001386452.1"
                     /db_xref="GeneID:686234"
                     /db_xref="RGD:1584329"
                     /translation="MSFHLCVWLFRNLSSLSACSQRHVFLYGQQFRQINLDPRLWNFR
                     QNKTHVLYRLLNKSWSRGYCQGTRKLWKHKALQKYMEGLNDEYQSLDQCLQDISEDEG
                     DRRASHRRHAELAPLVAVYQEIQEAEQAIEELESMCKSLNKQDEKQLQELVSEERQII
                     DQKIHRLYSELLEHLVPKEKCDRSNVILEVTSGRTTGGDICQQFTREIFDMYQNYSYY
                     KHWRFELLNYTPADYGGLHHAAARISGDSVYKHLKYEGGIHRVQRIPEVGLSSRMQRI
                     HTGTMSVIVLPQPDEVDVKVDPRDLRVDTFRARGAGGQHVNTTDSAVRLVHIPTGLVV
                     ECQQERSQLKNKEIALRVLRARLYQQIIEKDKCQQQNARKLQVGTRAQSERIRTYNFT
                     QDRVTDHRIAYEVRDIKEFLRGEKCLDQLIERLLQSADEEAIAEFLDESLQSVK"
     exon            788..879
                     /gene="Mtrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            880..961
                     /gene="Mtrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            962..1069
                     /gene="Mtrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1070..1242
                     /gene="Mtrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1243..1360
                     /gene="Mtrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1361..1497
                     /gene="Mtrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1498..1596
                     /gene="Mtrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1597..1954
                     /gene="Mtrf1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggacttcaag gctcccgcga gtcagctcca aataagttcc gcgcgccgtc cttccagagg
       61 agtctccttc tgacttcatc atttcattct tgtttaccct tacggacacc taaggaccat
      121 tactctgcga gaagtgtcaa attggaggag gagccgggag cgaaccgtaa cccggaagca
      181 gtagcctgga aatgatcatg cttgcagtac ctggcgctga aatgttgcgg gcacagaagg
      241 ctcagttatc agttctcagc taagagagaa gcatcctcaa gaggtggtca cagggttgag
      301 aatgaaaagc actgatcttg gaatagacaa gctgttataa tacaaactct gcctctatcc
      361 actgctgaga tgagttttca cctgtgtgtt tggctttttc ggaatctgtc gtctctcagt
      421 gcgtgctccc agagacatgt cttcctctat ggtcagcaat ttagacaaat aaaccttgat
      481 ccaaggctgt ggaattttag acaaaataag actcatgttc tctatcggct cttaaataaa
      541 agttggtcca ggggctactg tcaaggcaca aggaagcttt ggaaacataa agccctacag
      601 aagtatatgg aaggcctgaa tgacgagtac caaagccttg accagtgctt gcaggacatc
      661 tctgaggacg aaggagaccg aagggcctca cacagaaggc acgctgagtt ggcgccactc
      721 gtggctgttt atcaagaaat tcaggaggct gaacaagcca ttgaagaatt agagtcaatg
      781 tgtaaaagtc taaataaaca agatgaaaag cagctgcaag aacttgtgtc agaagaaagg
      841 caaatcattg atcagaagat ccacagactg tatagtgagc ttttggagca tttagtgcct
      901 aaggagaagt gtgaccggag caacgttatt ctagaagtga catccggaag aactactgga
      961 ggtgatatct gccaacaatt tacccgggaa atatttgata tgtaccagaa ttactcatac
     1021 tataaacact ggagatttga gctgctaaat tacacaccag cagattacgg tggactgcat
     1081 catgcagctg cccgcatttc tggtgacagt gtctataagc atttgaagta tgaaggtgga
     1141 attcatcgag ttcagcgaat cccagaggtg ggcctgtcat ctcggatgca gcgtattcac
     1201 acggggacga tgtcagttat tgtccttcca cagccagatg aggtagatgt gaaagtagat
     1261 cccagggatc tgcgcgtaga cacatttcga gccagaggag ccggtgggca gcatgtcaac
     1321 acaacagaca gtgctgtgag gctcgtccat atccccacag gactggtggt agaatgccaa
     1381 caagaacgat cacagttgaa aaataaagaa atagctttgc gtgtgttgag agctagactc
     1441 taccaacaga ttatcgagaa agacaagtgt cagcagcaga atgctaggaa actgcaggtg
     1501 ggaacaagag cccagtcgga gagaattcgg acatataatt tcacccagga tagagtcact
     1561 gaccacagga tagcgtatga agtccgtgac attaaggaat ttttacgtgg tgagaagtgc
     1621 ctggatcagc taattgagag actgcttcaa tcagcagatg aagaggccat tgctgaattt
     1681 ttggatgaaa gccttcaatc agtgaaataa atgtggttta ttattgttat ataaatgaag
     1741 tggactttaa tcaggaaaca gacaggtgtg gaaacttaat aaatattcat aaagtttgga
     1801 tgcgcccaca gagtttttat agaaatcatt ttaatgaaag aaactcacat ttcttgacat
     1861 agaggtttat tttaggtttc agtaagtaat ccaactctcc aagtagaaaa taagcttgta
     1921 acatcaaaaa gaaaaataaa atatgaaaaa ttga
//
