LOCUS       XM_039095747            1808 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus mitochondrial poly(A) polymerase
            (Mtpap), transcript variant X6, mRNA.
ACCESSION   XM_039095747
VERSION     XM_039095747.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039095747.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1808
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1808
                     /gene="Mtpap"
                     /gene_synonym="Papd1"
                     /note="mitochondrial poly(A) polymerase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 ESTs, 1 long SRA read, 2 Proteins, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 149 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:307050"
                     /db_xref="RGD:1310900"
     CDS             754..1764
                     /gene="Mtpap"
                     /gene_synonym="Papd1"
                     /codon_start=1
                     /product="poly(A) RNA polymerase, mitochondrial isoform
                     X4"
                     /protein_id="XP_038951675.1"
                     /db_xref="GeneID:307050"
                     /db_xref="RGD:1310900"
                     /translation="MFLDLDETGNLSDHKNTGNFLMEFQVKNVPSERVATQKILSVIG
                     ECLDNFGPGCVGVQKILNARCPLVRFSHQGSGFQCDLTANNSIALKSSELLYIYGSLD
                     SRVRALVFGVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKSM
                     ADAEDRCILEGNNCTFIQDINKIKPSGNTETLELLLKEFFEYFGNFAFNKNSINIRQG
                     REQNKPDSSPLYIQNPFETSLNISKNVSQNQLQKFVELARDSAWILEQEKKDQPSSSS
                     HPWGLAALLLPPGAGQTSLSRKKKKKPMSEKVKGLLASIKSNSPDRSTDASGKRAVST
                     QA"
ORIGIN      
        1 tgacaatggc tgctcgcggc gtggggctcc tgacccgctt gcccctgtgt tcccagagaa
       61 ggagccgagt cccgcactct atttccaggc acctcagttg tccaggaacc agagtcgcga
      121 gcgtcgggag cgaagaacag ccttcggggg gtgcggaaac aggcactgaa gacaagaccc
      181 tccaaaagaa attctctgag gtgcagaaag agagaagaga acaggcccag cggactgttt
      241 tgatacattg tccaaataat atcaatgaga aaaagtttct caagtatctg tcccagcatg
      301 gatccatcag taatcatttc ttctacgaga gctttggtct ctatgctgtt gtagaatttt
      361 gccaaaaaga cagtataaac tctctgcaga atggaacaca tactccaacc cagagcacag
      421 aggctgcaat tccatttaag tcacgtttcc tgaacttaaa gctgaagaat ccatctaacc
      481 aagtatctgg acaatcgttt gtacaagcag acagccagtc acctccttca agcaagaaac
      541 tctttgaatt gctgagttac gcagaaagcc tagatagacg cccagctgac cgctcttctg
      601 aaggccttcc agctcacgga ggagaatgtc aggctccgcc atctcacctg ctctctgatc
      661 gaggacatcg ccgctgccta ttttcccagc tgtgtcgtct ggccctttgg ctcctcagtg
      721 aacacgtttg gcaaattagg atgtgatttg gacatgtttt tagatttaga cgaaactgga
      781 aatctcagtg atcacaagaa tacagggaat tttttaatgg aatttcaagt gaaaaacgtt
      841 ccctctgaaa gggttgcgac ccagaagatc ttatctgtaa taggagagtg ccttgacaat
      901 tttggccctg gctgtgtggg tgttcagaag atactcaatg ctcgctgtcc actggtgaga
      961 ttctcccatc agggctctgg attccagtgt gacctgactg ccaacaatag tattgctttg
     1021 aaaagttccg agctccttta tatatatggc tccctggatt caagagtaag agctttggtg
     1081 ttcggtgtgc gatgctgggc tcgggcacat tcgttaacaa gcagtattcc tggtgcttgg
     1141 attacaaact tctccctaac aatgatggtc atctttttcc tccagagaag atcacccccc
     1201 attctcccaa ctctggattc tctaaagtcc atggcagatg ctgaagacag atgtattcta
     1261 gagggaaaca attgtacatt catccaggac ataaataaaa tcaaaccttc tggaaacaca
     1321 gaaacactag aattactact aaaggaattt tttgagtatt ttggcaattt tgctttcaat
     1381 aagaattcca taaacatccg acagggaagg gagcaaaaca agcctgattc ttctcctctg
     1441 tacatccaga atccttttga aacatctctt aacataagca aaaatgtgag tcagaaccag
     1501 ctacaaaaat ttgtggaatt ggccagagac agtgcctgga ttttggaaca ggaaaaaaag
     1561 gatcagcctt cttccagtag ccatccctgg gggctggctg ccctcctgct gcctcctggg
     1621 gcaggccaga catctctctc tcggaaaaag aagaaaaagc cgatgagtga aaaagtcaaa
     1681 ggcttgttag catccataaa aagtaacagc cctgaccgtt ctacagatgc cagtggaaag
     1741 agagccgtca gtacacaggc gtgatggtag ccctttggac ttctgggaag aactgccacc
     1801 aaatgtta
//
