LOCUS       XM_039095746            1527 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus mitochondrial poly(A) polymerase
            (Mtpap), transcript variant X3, mRNA.
ACCESSION   XM_039095746
VERSION     XM_039095746.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1527
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1527
                     /gene="Mtpap"
                     /gene_synonym="Papd1"
                     /note="mitochondrial poly(A) polymerase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 ESTs, 1 long SRA read, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     35 samples with support for all annotated introns"
                     /db_xref="GeneID:307050"
                     /db_xref="RGD:1310900"
     CDS             39..1382
                     /gene="Mtpap"
                     /gene_synonym="Papd1"
                     /codon_start=1
                     /product="poly(A) RNA polymerase, mitochondrial isoform
                     X3"
                     /protein_id="XP_038951674.1"
                     /db_xref="GeneID:307050"
                     /db_xref="RGD:1310900"
                     /translation="MAARGVGLLTRLPLCSQRRSRVPHSISRHLSCPGTRVASVGSEE
                     QPSGGAETGTEDKTLQKKFSEVQKERREQAQRTVLIHCPNNINEKKFLKYLSQHGSIS
                     NHFFYESFGLYAVVEFCQKDSINSLQNGTHTPTQSTEAAIPFKSRFLNLKLKNPSNQV
                     SGQSFVQADSQSPPSSKKLFELLSYAESIDAQLTALLKAFQLTEENVRLRHLTCSLIE
                     DIAAAYFPSCVVWPFGSSVNTFGKLGCDLDMFLDLDETGNLSDHKNTGNFLMEFQVKN
                     VPSERVATQKILSVIGECLDNFGPGCVGVQKILNARCPLVRFSHQGSGFQCDLTANNS
                     IALKSSELLYIYGSLDSRVRALVFGVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQ
                     RRSPPILPTLDSLKSMADAEDRCILEGNNCTFIQDINKIKPSGNTETLGKGAKQA"
ORIGIN      
        1 cggctgacct ctggcgttta cttcctgctg ccgtgacaat ggctgctcgc ggcgtggggc
       61 tcctgacccg cttgcccctg tgttcccaga gaaggagccg agtcccgcac tctatttcca
      121 ggcacctcag ttgtccagga accagagtcg cgagcgtcgg gagcgaagaa cagccttcgg
      181 ggggtgcgga aacaggcact gaagacaaga ccctccaaaa gaaattctct gaggtgcaga
      241 aagagagaag agaacaggcc cagcggactg ttttgataca ttgtccaaat aatatcaatg
      301 agaaaaagtt tctcaagtat ctgtcccagc atggatccat cagtaatcat ttcttctacg
      361 agagctttgg tctctatgct gttgtagaat tttgccaaaa agacagtata aactctctgc
      421 agaatggaac acatactcca acccagagca cagaggctgc aattccattt aagtcacgtt
      481 tcctgaactt aaagctgaag aatccatcta accaagtatc tggacaatcg tttgtacaag
      541 cagacagcca gtcacctcct tcaagcaaga aactctttga attgctgagt tacgcagaaa
      601 gcatagacgc ccagctgacc gctcttctga aggccttcca gctcacggag gagaatgtca
      661 ggctccgcca tctcacctgc tctctgatcg aggacatcgc cgctgcctat tttcccagct
      721 gtgtcgtctg gccctttggc tcctcagtga acacgtttgg caaattagga tgtgatttgg
      781 acatgttttt agatttagac gaaactggaa atctcagtga tcacaagaat acagggaatt
      841 ttttaatgga atttcaagtg aaaaacgttc cctctgaaag ggttgcgacc cagaagatct
      901 tatctgtaat aggagagtgc cttgacaatt ttggccctgg ctgtgtgggt gttcagaaga
      961 tactcaatgc tcgctgtcca ctggtgagat tctcccatca gggctctgga ttccagtgtg
     1021 acctgactgc caacaatagt attgctttga aaagttccga gctcctttat atatatggct
     1081 ccctggattc aagagtaaga gctttggtgt tcggtgtgcg atgctgggct cgggcacatt
     1141 cgttaacaag cagtattcct ggtgcttgga ttacaaactt ctccctaaca atgatggtca
     1201 tctttttcct ccagagaaga tcacccccca ttctcccaac tctggattct ctaaagtcca
     1261 tggcagatgc tgaagacaga tgtattctag agggaaacaa ttgtacattc atccaggaca
     1321 taaataaaat caaaccttct ggaaacacag aaacactagg gaagggagca aaacaagcct
     1381 gattcttctc ctctgtacat ccagaatcct tttgaaacat ctcttaacat aagcaaaaat
     1441 gtgagtcaga accagctaca aaaatttgtg gaattggcca gagacagtgc ctggattttg
     1501 gaacaggaaa aaaaggatca gccttct
//
