LOCUS       NM_001107312            2536 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus myotubularin related protein 7 (Mtmr7), mRNA.
ACCESSION   NM_001107312 XM_001058099 XM_006253195 XM_240417
VERSION     NM_001107312.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2536)
  AUTHORS   Lorenzo,O., Urbe,S. and Clague,M.J.
  TITLE     Systematic analysis of myotubularins: heteromeric interactions,
            subcellular localisation and endosome related functions
  JOURNAL   J Cell Sci 119 (Pt 14), 2953-2959 (2006)
   PUBMED   16787938
REFERENCE   2  (bases 1 to 2536)
  AUTHORS   Mochizuki,Y. and Majerus,P.W.
  TITLE     Characterization of myotubularin-related protein 7 and its binding
            partner, myotubularin-related protein 9
  JOURNAL   Proc Natl Acad Sci U S A 100 (17), 9768-9773 (2003)
   PUBMED   12890864
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On Feb 14, 2022 this sequence version replaced NM_001107312.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643288.55855.1,
                                           SRR26643287.32822.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-92                JAXUCZ010000016.1  58344755-58344846
            93-215              JAXUCZ010000016.1  58372086-58372208
            216-378             JAXUCZ010000016.1  58373920-58374082
            379-536             JAXUCZ010000016.1  58383478-58383635
            537-665             JAXUCZ010000016.1  58394345-58394473
            666-800             JAXUCZ010000016.1  58399773-58399907
            801-933             JAXUCZ010000016.1  58405328-58405460
            934-1043            JAXUCZ010000016.1  58422490-58422599
            1044-1169           JAXUCZ010000016.1  58423669-58423794
            1170-1219           JAXUCZ010000016.1  58425412-58425461
            1220-1420           JAXUCZ010000016.1  58427831-58428031
            1421-1561           JAXUCZ010000016.1  58430794-58430934
            1562-1688           JAXUCZ010000016.1  58432461-58432587
            1689-2536           JAXUCZ010000016.1  58434835-58435682
FEATURES             Location/Qualifiers
     source          1..2536
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16q12.1"
     gene            1..2536
                     /gene="Mtmr7"
                     /note="myotubularin related protein 7"
                     /db_xref="GeneID:306490"
                     /db_xref="RGD:1306608"
     exon            1..92
                     /gene="Mtmr7"
                     /inference="alignment:Splign:2.1.0"
     CDS             69..2051
                     /gene="Mtmr7"
                     /EC_number="3.1.3.-"
                     /codon_start=1
                     /product="myotubularin-related protein 7"
                     /protein_id="NP_001100782.2"
                     /db_xref="GeneID:306490"
                     /db_xref="RGD:1306608"
                     /translation="MEHIRTPKVENVRLVDRVSCKKAALGTLYLTATHVIFVENAPDT
                     RKETWILHSQISTIEKQATTATGCPLLIRCKNFQIVQLVIPQERDCHDVYVSLIRLAR
                     PVRYEELYCFSFNPKLDKEEREQGWLLVDLSEEYKRMGLPDNYWQLSDVNRDYRVCDS
                     YPTELYVPRSATAHIIVGSSKFRSRRRFPALSYYCKESHASICRSSQPLSGFSARCLE
                     DEQMLQAIRKANPRSDFIYVVDTRPKLNAMANRAAGKGYENEDNYSNIKFQFIGIENI
                     HVMRNSLQKMLEVCELKSPSMSDFLWGLENSGWLRHIKAIMDAGIFIAKAVSEEGTSV
                     LVHCSDGWDRTAQVCSVASLLLDPYYRTLKGFMVLIEKDWISFGHKFNHRYGNLDGDP
                     KEISPVIDQFIECVWQLMEQFPCAFEFNERFLIHIQHHVYSCQFGNFLCNSQKERREL
                     KIQERTYSLWSNLWKNRADYLNPLFRADHSQTQGSLHLPTAPYNFTYKFWNGMYNRFE
                     KGLQPRQSVTDYLMAVKEESQQLEEELESLEERLEKIQKVHLNGAKVKSKQSEPSKHS
                     GFSTSDNSTANTPQDYSGNMKSFPSRSPSQGDEDSALILTQDNLKSSDPDLSVNSDQE
                     SGVEDLSCRSPSGGEHAPSEDSGKDRDSDEAVFLTA"
     exon            93..215
                     /gene="Mtmr7"
                     /inference="alignment:Splign:2.1.0"
     exon            216..378
                     /gene="Mtmr7"
                     /inference="alignment:Splign:2.1.0"
     exon            379..536
                     /gene="Mtmr7"
                     /inference="alignment:Splign:2.1.0"
     exon            537..665
                     /gene="Mtmr7"
                     /inference="alignment:Splign:2.1.0"
     exon            666..800
                     /gene="Mtmr7"
                     /inference="alignment:Splign:2.1.0"
     exon            801..933
                     /gene="Mtmr7"
                     /inference="alignment:Splign:2.1.0"
     exon            934..1043
                     /gene="Mtmr7"
                     /inference="alignment:Splign:2.1.0"
     exon            1044..1169
                     /gene="Mtmr7"
                     /inference="alignment:Splign:2.1.0"
     exon            1170..1219
                     /gene="Mtmr7"
                     /inference="alignment:Splign:2.1.0"
     exon            1220..1420
                     /gene="Mtmr7"
                     /inference="alignment:Splign:2.1.0"
     exon            1421..1561
                     /gene="Mtmr7"
                     /inference="alignment:Splign:2.1.0"
     exon            1562..1688
                     /gene="Mtmr7"
                     /inference="alignment:Splign:2.1.0"
     exon            1689..2536
                     /gene="Mtmr7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 attgcgccgc acgcgcgcgc aggtgcgtga ggccgcgccc gccgggaacc ctgcagacgc
       61 gggccgccat ggaacacatc cgtaccccta aggttgaaaa tgtgcgcttg gtagaccgag
      121 tgtcttgtaa aaaagcagcg ctgggaactt tgtatctgac ggccactcac gtcatattcg
      181 tggaaaatgc acccgacaca aggaaagaaa cctggatact tcacagtcag atctccacca
      241 ttgaaaagca ggcgacgaca gctacgggct gccctctact cattcgctgc aagaactttc
      301 agattgtaca acttgtcata ccgcaggaga gagactgcca cgacgtgtat gtctctctga
      361 tacgccttgc gcggccagtg agatacgagg agctatactg cttttccttc aaccccaagc
      421 tggataagga agaacgagag cagggctggt tgctggttga cctgagtgaa gaatacaagc
      481 gaatgggcct cccggataat tattggcagc tcagcgatgt gaatagagac tacagagttt
      541 gtgactctta ccccacggaa ctgtatgtcc ccagatcggc cacagcacac atcatcgtgg
      601 gcagctccaa gttccggagc agacggcgat ttcctgccct ttcctactac tgcaaagaaa
      661 gccatgcctc catctgcagg agcagccagc ccctttccgg cttcagtgct cggtgcctgg
      721 aggatgagca gatgctccaa gccatcagga aagccaatcc cagaagtgac ttcatttacg
      781 tcgtggacac gaggcctaaa cttaatgcaa tggcaaatcg tgctgcaggg aaaggctatg
      841 agaatgaaga caattattcc aatatcaagt ttcagtttat tgggatagag aacatccacg
      901 tcatgaggaa cagtcttcag aaaatgctgg aagtatgtga acttaaatct ccatccatga
      961 gtgatttcct atgggggctc gagaactcag gctggctgag gcatatcaaa gccatcatgg
     1021 atgcagggat cttcattgca aaggcagttt cagaggaagg gacaagtgtg cttgtccact
     1081 gttctgacgg ttgggacaga acggcccagg tgtgctcggt ggcaagcctg ctgctggacc
     1141 cttactatcg gactctgaaa ggattcatgg tgttaattga aaaggactgg atttcctttg
     1201 gacataaatt taatcataga tatggcaatt tagacggtga cccaaaagaa atctctccag
     1261 taattgacca gttcatcgag tgtgtctggc agttaatgga acagttccct tgcgcctttg
     1321 agttcaatga gaggtttttg attcacattc aacatcatgt ttactcctgc cagtttggga
     1381 acttcctgtg taatagccag aaggagagac gagaactcaa gattcaagaa agaacttact
     1441 ctttgtggtc gaacctgtgg aagaatcggg ctgactacct caatcctctg tttagagctg
     1501 accacagtca gacccagggg agccttcatc tgcctacagc tccatacaac ttcacatata
     1561 agttttggaa tgggatgtat aaccgctttg aaaaggggct gcagcctcga cagtctgtta
     1621 cagattacct catggctgtg aaggaggagt cccagcagct ggaggaagaa ctggagtccc
     1681 tagaagaaag gctggaaaaa attcagaaag tccatttaaa tggcgccaaa gtgaagagta
     1741 agcaaagtga acccagcaaa cactcggggt tttctacctc agacaacagc acagccaaca
     1801 ctcctcagga ttacagtggg aacatgaagt ccttcccatc caggagcccc tcccagggtg
     1861 atgaagattc tgctctgatt ctaacccaag acaatttaaa aagctcagac cccgatcttt
     1921 cagtgaatag tgatcaagag tctggggtgg aggatttgag ctgtcggtct cccagtggtg
     1981 gtgagcatgc acccagtgaa gacagcggca aggaccggga ctctgatgaa gctgtgtttc
     2041 tcactgcctg aagtttccct ttggagttcc aaagtaaaag acaaacactt tcaaattaag
     2101 gggaaagtgc aattcgtaat aaaaatgttg agaaatggca agttccatcc agaaccatga
     2161 aattagagct gcgaaaatga acaaaaaata acaatgcttt atcaatagcc agttgtttta
     2221 tcacagtata ataaagactg atcaccattc ccgaggctca tcagactatg aaaatgatat
     2281 tcactacaaa ggacgtctct tcccctaagg ttgtccagac aaggcttccc tggcacagca
     2341 gcatgtctct gcttctaaag ccctcctctc ttgtctctca tacctgttaa tgtttgcagt
     2401 tttcttttca cttccagata tggtttgcgt tcagagacat ttgacatttc cttctgcctt
     2461 tacccatatt ttaaaatata agtactgaat acctctttct gttaataaat atattcctaa
     2521 aaagctttga aattaa
//
