LOCUS       XM_039092048            5873 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus myotubularin related protein 3
            (Mtmr3), transcript variant X12, mRNA.
ACCESSION   XM_039092048
VERSION     XM_039092048.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092048.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5873
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5873
                     /gene="Mtmr3"
                     /note="myotubularin related protein 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 37 ESTs, 8 long SRA reads, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 171 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:305482"
                     /db_xref="RGD:1310972"
     CDS             484..3969
                     /gene="Mtmr3"
                     /codon_start=1
                     /product="myotubularin-related protein 3 isoform X5"
                     /protein_id="XP_038947976.1"
                     /db_xref="GeneID:305482"
                     /db_xref="RGD:1310972"
                     /translation="MDEEMRHSLECIQANQIFPRKQLIREDENLQVPFLELHGESTEY
                     VGRAEDAIIALSNYRLHIKFKESLVNVPLQLIESVECRDIFQLHLTCKDCKVIRCQFP
                     TFEQCQDWLKRLNNAIRPPGKIEDLFSFAYHAWCMEVYASEKEQHGDLCRPGEHVTSR
                     FKNEVERMGFDMNNAWRISNINEKYKLCGSYPQELIVPAWITDKELESVAGFRSWKRI
                     PAVIYRHQSNGAVIARCGQPEVSWWGWRNADDEHLVQSVAKACASDSQSSVGKVSTRN
                     SCRGFPNAGDLSDVEFDASLSNASGTESLALQPQKLLILDARSYAAAVANRAKGGGCE
                     CPEYYPNCEVVFMGMANIHSIRRSFQSLRLLCTQMPDPGNWLSALESTKWLHHLSVLL
                     KSALLVVHAVDRDQRPVLVHCSDGWDRTPQIVALAKLLLDPYYRTVEGFQVLVEMEWL
                     DFGHKFADRCGHGENSDDLNERCPVFLQWLDCVHQLQRQFPCSFEFNEAFLVKLVQHT
                     YSCLFGTFLCNNAKERGEKQTQERTCSVWSLLRAGNKAFKNLLYSSQSEAVLYPVCHV
                     RNLMLWSAVYLPCPSPSTPTDDSCAPYPAPGTSPDEPPLSRLPKTRSFDNLTTTCDNM
                     VPLASRRSSDPSLNEKWQEHGRSLELSSFAGSGEEVPAIDSLRRPSRLLGGAELSVAA
                     GVAEGQMENILQEATKEESGVEEPTHREHTEVPEVKEEAPLAKESRTAAQGSGVLYQE
                     PQLDDATLRSHLGPSLSSFSQGIPEHREVGHSVLSSSLPASLRGEDSQEVPVEQPQVE
                     NIAEDRENVVPAVPVDVKIGLGTSESSPLLPSQVPFETRGPHMNNSVHMLLEDKVKSE
                     SGPQLHHRPCLASSGRFSGKDMLPIAPEPRSAERPQWDSVLHRTSSPGNTLSLMMQAP
                     CALPLDKCRQRIVCNGALETENKASEQPAGFDTLQKYPTPNGHCANGETGRSKDSLSH
                     QLSATSYSSAHSCSRNLHHKWLNSHSGRPSTTNSPEQPSRSHLDDDGMPVYTDTIQQR
                     LRQIESGHQQEVETLKKQVQELKSRLESQYLTSSLRFNGDFGDEVMTRWLPDHLAAHC
                     YACDSAFWLASRKHHCRNCGNVFCSSCCNQKVPVPSQQLFEPSRVCKSCYSSLHPTSS
                     SIDLELDKPIAATSN"
ORIGIN      
        1 cggcagcggt ggcggcggag cagccggtgg agacgctcca gcggcccagg cgctgccccc
       61 cgccgaccct ggctggcagc ctcctggggt ggcggaggag gccgtgcggt ggcgggcctc
      121 gccatgtcct gcctcccgag tacctggtga cctgttttga ctctccattt ggaagggcct
      181 ggtctgtacc attgtaaaca tgctttaccg agttgtgatg actgctcctc ctccttgttt
      241 ttggcctggg aactgagccc aaggtcttat ccagatttcc ttgtaaaacc ttgtagaaga
      301 aaaagttctc aggaagatac ttgtgcatcg gagtcagagg ctggtgcaag ctggctagcc
      361 agagaaccaa atcagtgaac ccccagttct acagcagatc ctgccttagt ctcaagcaga
      421 agagaaagaa gaaccttgtc agagactgga gaaggacggg gtctctcctg acctggtctg
      481 gtcatggatg aagagatgcg gcatagcctt gagtgcatcc aggccaatca gatctttccc
      541 aggaagcagc tgattcggga ggatgaaaat cttcaggttc ctttccttga actccatgga
      601 gagagcacag agtatgtggg ccgtgctgag gatgccatca ttgccctctc taattacaga
      661 cttcacatca agtttaagga gtctcttgtg aatgttccat tacagcttat agaaagcgtt
      721 gaatgccgtg atatatttca gcttcacttg acatgcaaag actgcaaagt tatcaggtgt
      781 cagttcccaa cctttgagca gtgtcaagat tggcttaaga gattaaacaa tgcaatccga
      841 ccacctggaa aaatagaaga tctcttctca tttgcatacc atgcttggtg catggaggtc
      901 tatgccagtg aaaaagagca gcatggagac ctgtgcagac caggggaaca tgtaacgtca
      961 aggtttaaga atgaagtgga gcggatgggt tttgatatga acaatgcctg gaggatttcc
     1021 aacatcaatg agaaatacaa attatgtggt agttatccac aagagctcat agtacctgcc
     1081 tggatcactg acaaagaact agaaagcgtg gcaggcttca gatcctggaa gcgcatcccc
     1141 gccgtcatct acaggcacca gagcaatgga gccgtcattg cccgctgcgg acagcccgag
     1201 gttagctggt ggggctggcg gaatgctgat gatgaacatc tggtgcagtc agtggccaag
     1261 gcttgtgctt ctgactctca gtcaagtgtt ggcaaggttt ccactcggaa cagttgtcgg
     1321 ggctttccca atgcagggga tctttctgat gtggagttcg atgcctctct gtcaaatgct
     1381 tcaggaacag aaagtttagc tctccagcca cagaagcttt tgatcttgga cgcacgctcc
     1441 tatgcagcag ctgtggcaaa tcgagccaaa ggagggggct gtgagtgtcc agagtattat
     1501 ccaaactgtg aagttgtgtt tatgggaatg gcaaacatac attctatccg gaggagtttc
     1561 cagtctctgc gactgctgtg cacacagatg ccagatcctg gaaattggct ttctgctctt
     1621 gaaagtacga agtggctcca ccacctgtct gtgcttctga agtcggcact tctcgtggtg
     1681 catgctgtgg accgagatca gcgaccagtg ctggtgcact gctcagatgg ctgggatcgc
     1741 actccccaaa tcgtggccct ggctaagctt ctgctggacc cttattaccg aaccgtagag
     1801 ggtttccaag tccttgtgga gatggaatgg ctggattttg gccataagtt tgctgatcgg
     1861 tgtggtcatg gggagaactc agatgacctg aatgagcgtt gcccagtgtt tctccaatgg
     1921 cttgactgtg ttcatcaact ccagaggcaa tttccttgct cttttgagtt caacgaagca
     1981 ttccttgtga agctggttca gcacacctat tcctgtctct ttgggacatt cctgtgcaac
     2041 aacgccaagg agagggggga gaagcagact caggaacgga catgctcggt gtggtcgctt
     2101 ctgcgggccg gcaacaaggc cttcaaaaac ctgctatatt catcccagtc agaagccgtg
     2161 ctgtaccctg tgtgccatgt gcggaatctg atgctgtgga gtgcagtgta ccttccctgc
     2221 ccgtccccat ccacccccac agacgacagc tgtgcaccat acccagcccc aggcaccagc
     2281 cctgatgagc ctccactgag ccggctaccc aagactagat catttgacaa tctgaccaca
     2341 acctgtgaca acatggtgcc gctggccagc cggcgcagca gtgaccccag cctgaatgag
     2401 aagtggcagg agcacgggcg ctcgctggag ttgagcagct ttgctggctc tggggaagag
     2461 gtgcctgcca tagacagcct gcgcaggccc agcaggctgc tcggaggagc cgagctatct
     2521 gtggcagctg gtgtggctga agggcagatg gagaatattt tgcaagaggc caccaaagag
     2581 gagagtgggg tagaagagcc cacccacagg gagcacactg aggtgccaga ggtcaaagag
     2641 gaggcacccc tagcaaaaga gagtaggacg gcagctcagg gctcaggtgt actttaccaa
     2701 gaaccacagc tggatgatgc tactctaagg agccatttag gccccagcct gtcttcgttc
     2761 tcccagggta ttcctgagca tcgggaggtg gggcacagtg ttctctctag ttcactccca
     2821 gcttctctca ggggagagga ctcccaggag gtccctgtag aacagcctca agtagagaac
     2881 attgcagagg acagggagaa tgtagtccct gctgtcccag tagatgtaaa aattggcctt
     2941 ggtacctcag agtctagtcc tctgctgcct tcccaagtcc cattcgagac aagaggacca
     3001 cacatgaaca actccgtgca catgttatta gaagataagg tgaagtccga gagtgggccc
     3061 cagctccatc acagaccctg cctggcaagc agtggtagat tcagtggcaa ggacatgctt
     3121 cctatagcac cagagcccag gtctgctgag aggccccagt gggactctgt gctacacagg
     3181 acttcttccc ctggcaacac cctcagcctg atgatgcagg ctccttgtgc cttgccatta
     3241 gacaaatgta gacagagaat tgtgtgcaac ggtgccctag agactgaaaa caaggcctca
     3301 gaacagcctg cagggtttga cacccttcag aagtacccca cacccaatgg gcattgtgcc
     3361 aatggggaga ctgggaggag taaggactca ctgagccacc agctgtctgc cacaagctat
     3421 agctctgctc actcgtgctc aaggaacttg caccacaagt ggctgaatag ccactcgggg
     3481 aggccatcca ctaccaacag ccctgagcag ccttcccgca gccacctgga tgatgacggc
     3541 atgcctgtgt acacagacac gatccaacag cgcctgcgac agatagagtc tggtcaccag
     3601 caggaagtgg agaccttgaa gaaacaagtc caggaactga agagtcgcct ggagagccag
     3661 tacctgacca gctctctgcg cttcaatggg gactttggag atgaagtgat gacccgttgg
     3721 ctacctgacc acttggctgc ccactgctat gcctgtgaca gtgccttctg gcttgccagt
     3781 aggaagcacc actgcaggaa ttgtgggaac gtattctgct ccagttgttg taaccagaag
     3841 gttccagttc ccagccagca gctctttgaa cccagtcgag tgtgcaagtc ttgctatagc
     3901 agcctccatc ccacaagctc cagcattgac cttgaactgg ataagcctat tgctgccact
     3961 tcaaactgaa gctcagtgac ctggggtgac agaggccatg ctgctgtccc tgtaacaggc
     4021 tcacacacag cctgggcagt ccgagaagcc catacatttt ggatgggggc atggaacaac
     4081 ctgtacagag attggggtgt accactggat cgtagatcga ttttcctttc cttccccttc
     4141 cctttccatc ctcctctttg ccttctaaaa agaaaaatgt cccagttgtc ttaatttttt
     4201 ttaatggaag cccagaggtt accaggctct tagaactgct gagtggcttg ctgtcgggca
     4261 ctctgtgaca tcactcagtg cttccctatg gaaggaggca caatgaaggc ctgagacagc
     4321 aggacagaaa gccagcctac cattaatgac cgttctccac atgaagctgt gccacagttg
     4381 actggtgcac ctttgcagct ggggaggctg gaagcccttt tcttgagtac tgttcctcag
     4441 agggatagat agggccatcc tacctcacag acaaaaagca ggatggtgtt gagaggaagc
     4501 acacagtgaa gtgctccaca ggcctcactt tgaaaagaga ggtatgtgct tcttttgagt
     4561 tactgagggc ctagatggct gacatgttgg cccaggtgga tccatcttta acaagattgg
     4621 gtagggcttt ctttgcttct ttaggcttcc agaccaaaag gtacagactg gccagaaagc
     4681 agtatcctgc tgcagtggtc aaggcctgca ctgagctggg cacctgaggt ccccctctgg
     4741 gtcctagtcc cataagcaat ctcttcctca gccaacacag ggaaatccag actcagggtt
     4801 ccacagtctc ctgttcccaa agcaaaccaa tcatgcatct ccccttgagg gacagatccc
     4861 cacagttccg aagctctcca cacaatcagc cttcctctct tacttctggg cagcaggaag
     4921 gacccaggag tcccttgtcc tgcttttggc tgcctgagtg ggcacatgtc tggctcttgc
     4981 tatcagtgaa gagcccttgg tgattgtagg gttcttagaa gatgacatgg ctgaggagat
     5041 tcggggtacc ttcccgtagt gagctttgat gtggtccaaa aagagcctta agtctgtagt
     5101 tatctgtgct ggaggtgggt atgaagggta gagagcagtt ttggtttgta ctttgaattg
     5161 ttggcatctg tctgtgccca ccccatcccc caagggtgat gcttggctct gccaaaagct
     5221 gcaatctggt aacagagcag attatagtgt tggggctggg tgaggctggg tgaggctggg
     5281 ggacacctaa ttttagcctg gcctatgtcc ttgctcctct cctctggaag ctgttacctg
     5341 gccatgggcc ttccgtgtct caggaaggtg gcttctgcat gttcctcagt atgactggag
     5401 aagccagagc cttcccagca gttgtgtgct gaagggaagg ctgcagtctc cgagtattgc
     5461 tggtccttca ggagcaggcc gggcagaggc cgagtttagt gaaacagggt gaagttctcc
     5521 aagctcgctg tggtctggag ttgcgggtgg ggaaggtcgg cataactgaa gactgcagtt
     5581 cctagtgaga ggtgccaaga ggttatgata cgggtgtctt gggtctgttg tacagtgtga
     5641 ataagtgctt gcagctctta gccctttttg atcaatgaag cactttttta ttaatatttt
     5701 ctttgtatgt aaaggaggaa ccgtaactct ccatagctgt acatataacc cctttctcct
     5761 aaagaggagt ccgtgctcct atatttttca ttttttgtca aagcaagaag taaatacttt
     5821 agaattgtta aatacataga taaagtgaat aaagttgagt gtcagcaagg tgc
//
