LOCUS       XM_006242522            3996 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus myotubularin related protein 2
            (Mtmr2), transcript variant X3, mRNA.
ACCESSION   XM_006242522
VERSION     XM_006242522.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006242522.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006242522.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3996
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3996
                     /gene="Mtmr2"
                     /note="myotubularin related protein 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 76 ESTs, 6 long SRA reads, 16 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 43 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:315422"
                     /db_xref="RGD:1311865"
     CDS             347..2062
                     /gene="Mtmr2"
                     /codon_start=1
                     /product="myotubularin-related protein 2 isoform X2"
                     /protein_id="XP_006242584.1"
                     /db_xref="GeneID:315422"
                     /db_xref="RGD:1311865"
                     /translation="MEEPALLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKS
                     MERDPPFVLDASLGVISRVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRS
                     IFENLMKYAFPVSNGLPLFAFEYKEVFPENGWKLYDPLLEYRRQGIPNESWRITKVNE
                     RYELCDTYPALLAVPANIPDEELKRVASFRSRGRIPVLSWIHPESQATVTRCSQPMVG
                     VSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAEL
                     VFLDIHNIHVMRESLRKLKEIVYPNIEETHWLSNLESTHWLEHIKLILAGALRIADKV
                     ESGKTSVVVHCSDGWDRTAQLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQLRV
                     GHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGTFLC
                     NSEQQRGKENLPKKTVSLWSYINSQLEDFTNPLFGSYSNHVLYPVASMRHLELWVGYY
                     IRWNPRMKPQEPIHSRYKELLAKRTELQRKVEELQREISNRSTSSSERASSPAQCVTP
                     VQTVV"
ORIGIN      
        1 atgacattaa taaccggaga acactcagaa agcacctctt cgtttcatgg gatattcaac
       61 agaaattgaa ttggcagtga aaagagctgt ttaaacaaag caagtggttt agatctcact
      121 gtaacaactg tggccagctg cagactggga gtagaagaag catggctgat cctgcaccct
      181 cttgagactt gttcactagg agtgtgaaaa tgcttccact tctcattcag agaactcggt
      241 tcataccaaa tcagtttctg ctatatcatc agattctatt tcaacctctg cagacaactt
      301 ctctcctgat ctgagggtcc tgagggaggc aaacaaatta gcagaaatgg aggaaccagc
      361 cctgcttcca ggagagaaca tcaaagatat ggccaaagat gtgacttaca tatgtccgtt
      421 cactggtgct gtacgaggga cgctgactgt cacaaattac agattatatt tcaagagcat
      481 ggaacgggac cctccgtttg ttctagatgc ttctcttggg gtgataagta gagtagaaaa
      541 aatcggtggt gcatctagcc gtggtgaaaa ttcttatggc ctggaaacgg tgtgcaagga
      601 tatcaggaat ttacgatttg ctcataaacc agaggggcga acaagaagat caatatttga
      661 gaatctaatg aaatatgcat ttcctgtgtc taacggcttg cctctttttg cttttgagta
      721 taaagaagta ttccctgaaa atgggtggaa actgtatgac ccccttctag agtacagaag
      781 acaggggatt ccaaatgaaa gctggagaat aacaaaggtc aatgaacgct atgaactctg
      841 tgacacatat cctgccctct tggccgtgcc agcaaacatt cctgatgagg aactcaagag
      901 agtggcatcc ttcaggtccc ggggccggat cccagtttta tcatggattc atcctgaaag
      961 tcaggccaca gtcacccgct gcagccagcc catggttgga gtgagtggga agcgcagcaa
     1021 agaggatgag aagtatcttc aggccatcat ggactccaat gcccagtctc acaaaatatt
     1081 tatatttgat gctcggccaa gtgtcaatgc tgttgccaat aaggcaaagg gcggaggtta
     1141 tgaaagtgaa gacgcttatc aaaatgcaga actcgttttc ctggacattc ataatatcca
     1201 tgttatgaga gaatcattac ggaagcttaa ggagattgtg taccccaaca ttgaggaaac
     1261 tcactggttg tctaacttag aatctacaca ctggctggaa cacatcaagc tcattcttgc
     1321 gggggctctt cggattgctg acaaggtgga gtctgggaag acgtctgtgg tggtgcactg
     1381 cagtgatggg tgggatcgca cagctcagct cacgtccctg gccatgctta tgctggatgg
     1441 atactatcga accatacgag gatttgaagt ccttgtggag aaagagtggc taagctttgg
     1501 acatcgattc caactaagag ttggccatgg cgataagaac catgctgatg cagaccgatc
     1561 acctgttttc cttcagttca ttgactgtgt ctggcagatg acaagacagt tccctaccgc
     1621 atttgaattc aatgagtatt ttctcattac catcctggac cacttgtaca gctgtctatt
     1681 tgggacattc ctctgtaaca gtgaacagca gaggggaaaa gagaatcttc ctaagaagac
     1741 agtgtcactg tggtcctata taaacagcca gctggaagac ttcactaatc ctctttttgg
     1801 gagctactcc aatcatgtcc tttacccagt agccagcatg cgccacctag agctctgggt
     1861 gggctattat ataaggtgga acccccggat gaaaccacag gaacctatcc acagcagata
     1921 caaagaactt cttgccaaaa gaacagagct tcaaagaaaa gtagaggaac ttcagagaga
     1981 aatttccaac cgctcaacct cctcttcaga gagagccagc tctcccgcac agtgtgtgac
     2041 tcctgtccaa actgttgtat gaaagaacta ggcatgttgc caggaacttg acattacagc
     2101 accttatgcg tagaaagcct tctgtgtttt aaacccatct gtgggagaat ccttcagatg
     2161 ctgtatttat ttcaaatctc tcttagatga gtttagaaac atagcggtgc aagtgacaat
     2221 gaagatgatc tcatttgtaa ttaaagatga cactaatctg aagtccccca aagaatacta
     2281 aagtactgca gtcctgtgct caccctggga gccagctttt catttaaagc tgtcttaaaa
     2341 gcactgctaa gagctctagg tggggagaaa agcaaggctg ttcttgcacc tgagagcata
     2401 cataccaagc cttgatctca actgtcccat tttttgtggt atttaatata gtaaaaagca
     2461 ttgtcttaaa attgttacag catagtagta gttggaaatt gctgctgaca ttgtaattag
     2521 cgtattttca acagcagtta ggaaacgatg ccttatatat ttgctttggg ggtgaaggga
     2581 caaagtaact gtcatccagg aattcaaaaa tattctttcc cgtcagccaa tttccatttg
     2641 tatgttgatc acaaatacca cagacacttt aaaaccttac cattactcca cttatcttaa
     2701 tgctgattgg caagttttaa aaacttaagt gctatattta aatttcacat gaacatttta
     2761 tcaaagacca ctctgcatgt gagttagtct cggtgccagc aagtaaagcc tcgcttctct
     2821 gctcgcctga gttgggtgct ggtgtgaaca gttgactcct ggtgtctgtt tcactctgta
     2881 taagagccat atgtaatgta ctgtaacaaa cgagcttctt accacttggt cttttaatta
     2941 aatgacttca aactttaccc ttgtccacag tagtctaaag tgtcttcccc acctccaccc
     3001 ccaaaatgtt aatctgcaac tgtccaattt gagccccccc cggctttgac atctaaatca
     3061 gactgtaaaa accactgttc tcgttcattg ttgaactgta gccatgatga tgctgaaatt
     3121 ggtacatcac acatatatgc acacggatct cttccctgca tctttttatg tggctattga
     3181 acttagagcc tcacacttgc caggcaaaag ctgtacccca gcagtaccca gtatctacaa
     3241 aaattggtac caactaattt gattggtgta ttagctataa aaatttttga ggtgctatta
     3301 tgttcccagc attcaattaa catttctgta gtagctcact ttcctcccta gtctgttttc
     3361 ctcattgaaa ccttttacca tcttggtatg acttaaagga atctctatct atctatctct
     3421 ctatctatct ctctatctct ctatctatct atctatctat ctatctctat ctatctatct
     3481 atctatctat cgatctatct atctatctat ctcatccatc caaaaccttc agctatcttc
     3541 tgtgacctcc aagaaatcct ctgtggaatg tgcacacgaa acgagctttc tgtgggactc
     3601 aactgcattc ctggtagact taaaaccccg cctgcctccc tccccacccc caccacccgc
     3661 atgaaagctc tccttcctta cgcagcacgg gatccatatt ggcatcttgt acagagtata
     3721 gaggagctct gctatgagtg aatgaacaag aaactgaagc cgatcaaaac ccaaagccta
     3781 cagttgggtt ccagctggag ataggtctct gtttggtaaa atccttctta cttgtggtcc
     3841 ttgtgattac agatgaacga ctgctgctgt ttccttcttc atcaagagtc ttcttgttac
     3901 cttttagttc cttctgctta tctgtgcttt gtttctccag ctggcaaata atcaaagtaa
     3961 ggaaaataat gaattcaata aaaacatttt ctttta
//
