LOCUS       XM_039102202            5569 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus myotubularin related protein 12
            (Mtmr12), transcript variant X5, mRNA.
ACCESSION   XM_039102202
VERSION     XM_039102202.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039102202.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5569
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5569
                     /gene="Mtmr12"
                     /gene_synonym="Pip3ap"
                     /note="myotubularin related protein 12; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 17 ESTs, 7 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 162 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:310155"
                     /db_xref="RGD:1307902"
     CDS             1665..3299
                     /gene="Mtmr12"
                     /gene_synonym="Pip3ap"
                     /codon_start=1
                     /product="myotubularin-related protein 12 isoform X4"
                     /protein_id="XP_038958130.1"
                     /db_xref="GeneID:310155"
                     /db_xref="RGD:1307902"
                     /translation="MFDTPKDWCWELERTKGSVKYKTVSVNEGYRVCDRLPAYFVVPT
                     PLLEDDVKRFQGRGIPIWCWSCHNGSALLKMSALPKEQDDSALQIQKSFLDGIYKTIH
                     RPPYEMVKTEDLSSNFLSLQEIQSSYCKFKQLFLIDSSSEFWDTDVKWFSLLESSGWL
                     DIIRRCLKRAIEIIECLEAQNMNVLLLEENASDLCCLLSSLVQVMMDAHCRTWTGFQS
                     LIQKEWVMGGHSFLDRCNHLHQSDKEEVPVFLLFLDCVWQLVHQHPPAFEFTETYLTV
                     LSDSLYIPIFSTFFFNSPHQKDTNMGRESLDAQSKPLTLLTVWDWSVQFEPKAQTLLR
                     NPLYVEKPKLDKGQRKGSRFKHQRQLSLPLTQSKSSPKRGFFREETDHLIKNLLGKRI
                     SKLINSSDDLQDNSREFYDNWHSKPTDYHGLLLPHIEGPEIKVWAQRYLRWIPEAQIL
                     GGGRVATMGKLLEMMEEVQSLQEKIEARHHRQEAIHVQAPGLLRNSARLSSLFPFAMH
                     QRHSAKPVLPTSGWKALGGEDDLAKREDEFVDLGDV"
ORIGIN      
        1 gtaagcggcg gagccggatg cgggcggtac tgccgctgcc gcggccctag ggatgggcgg
       61 agccccggcc gctggtgctg gtggccgccg ccactgccgg aacctgagcc ggagccgccg
      121 cctctgccgc cgcgcgtcgt tgcttcgcaa ggcggcggaa tgctggggaa agggggagtc
      181 ggcggtggcg gcggcaccaa ggcgcccaag ccctccttcg tgtcgtacgt gcgccctgag
      241 gaaattcaca caaatgagaa ggaagtaaca gagaaggagg aagtcactct tcacttgttg
      301 ccaggtgaac aactgctctg tgaagccagc acggtcctga agtatgtgca ggaggactct
      361 tgtcagcttg gtatctgtgg gaggctcgtc tgcaccgact tcagaatctc cttcctgggg
      421 gatgaaggct cggctgtgga taatggggcg gtatgtatga gctgcacctg ctcagaggta
      481 gggaaagagc agacgactcc attgctttcc ctgcagcttc tccctcctcc aacaaagaca
      541 aatgtctcct attagtggtc tgctcttgcc cttcaggggc tccatccacc tggaggacca
      601 ccaaaaattg ccatctgtac ttcatgacac ccttgctttt gttcttataa gctgacacca
      661 tcaacttttt cctgatttct tctgcaccca gcacatcatg agttacttaa ttggaataac
      721 ctcacacaca gtccttcatg tttcctctct gctgagtgct ttcacagatt caggaactga
      781 agattgtagt gaaactgatc aagagctcag cctttgagat tgggttgttt ctgtttgagc
      841 tgaacctagt tgcagggtca ttgtgagact tgtgtctact taggagtgag ccgtaggtca
      901 ggagcagctc tgcctcccag tggaaaccct accagggccc tgccagactg accccgtgtg
      961 tcagctgccc tggacccctt tgctttgtat ggagcagtat tgctgctgct gaggctggcc
     1021 ccctgcactg ccgtctgttg cagagcttag ctcctagtcc tgagcaaagg cagttttgcc
     1081 caagtgcatg gccctcctag cgcttcccat agcattccca aagctgtgca cacctgtgtg
     1141 catttgtgtg tggaaatact gttgtgtcct cacttgattt gggggcacag tgggtctcct
     1201 gggtgcagcc cagaactggc atgttcttcc tgggttgaag caactggtac tgcagcatcc
     1261 ctgcctttgg gagatgtgga tggctgcctc agttgctcag tgtccagggg agaaccgtga
     1321 ttgaaaagag tcacccttgt ttccttttga tttttttttt tcccttttta ggaaactcat
     1381 tttaagaata agatcatagg agtaaatgac attccactcc actgtgtgga tcagatttat
     1441 ggagtgtttg atgagaaaaa aaaacctctg tttggacaac tgaagaaata ccctgagaag
     1501 cttgttatcc attgcaaaga cctgcgggtg ctccacttct gtctgagatt gtcagtggca
     1561 taatccatca tacccagagt cccaaactgc tgaaaagact gtttctgttt tcctacgcag
     1621 ctgctgtgca tggcacagct gctgacccca ggaactgtac cgtaatgttt gacacaccca
     1681 aagactggtg ctgggagctg gagcggacca aggggagtgt gaagtacaaa acagtgagtg
     1741 tgaatgaagg ctacagagtc tgtgacaggt tgccggcata ctttgttgtc cccactcccc
     1801 ttctcgaaga cgatgtgaag cgttttcagg gccgtggcat accaatctgg tgttggtcct
     1861 gtcacaatgg aagtgccctt ctgaaaatgt cagcactgcc caaagaacag gatgacagtg
     1921 ctttgcaaat tcagaagagc ttcttggatg gaatttacaa gactatccac aggccaccct
     1981 acgaaatggt taaaacggaa gacttgtcaa gcaacttcct ttccctacag gagatccaga
     2041 gttcatactg taaatttaag cagctgtttc tgatagatag cagttcagaa ttttgggaca
     2101 cagatgtaaa gtggttttct ctcttagaaa gcagcggctg gctggatata atcagacgct
     2161 gcctgaagag agcaatagag attatagaat gcctggaagc gcagaacatg aacgtcctcc
     2221 tcttggaaga gaacgcttct gatctctgct gcctcctatc atctctggtg caagtgatga
     2281 tggatgccca ctgtcgaacc tggactgggt ttcagagcct catccaaaag gagtgggtca
     2341 tgggtggcca ctcttttttg gaccgctgta accatctcca ccagagcgac aaagaggagg
     2401 tccctgtgtt cctgcttttc ttggactgtg tctggcaact ggtgcaccag catcccccgg
     2461 catttgagtt cacagagaca tacctgactg ttctgtcaga tagcctgtat atacctattt
     2521 ttagcacctt cttcttcaat tcacctcatc aaaaagatac taacatgggc agggagagcc
     2581 tggatgcaca aagcaagcct ttgacgctgc tcaccgtgtg ggattggtca gtacagtttg
     2641 aacccaaagc acagactttg ctcagaaacc ctctttatgt ggaaaagcca aaactggaca
     2701 aaggccagcg gaaaggatca cgtttcaaac atcaacgaca actttctttg ccacttaccc
     2761 agtctaagtc atctcccaaa agaggatttt tcagagaaga aacggatcat ttaatcaaaa
     2821 accttctagg caagagaatt agtaaactta ttaactcttc cgatgatctc caggacaact
     2881 ctcgagagtt ctatgacaac tggcatagta agcccacaga ctaccatggc ttgttgttgc
     2941 ctcacattga ggggcctgaa atcaaggtgt gggctcagcg ctatttacgt tggattccag
     3001 aagcccaaat cctgggtggt ggcagagtgg ccactatggg caaactcttg gaaatgatgg
     3061 aggaagtgca gagcttacag gagaaaatag aggcaaggca tcacagacag gaggctatcc
     3121 acgtacaggc gcctggcctg ctcaggaact ctgcccgcct gtcttccctg ttcccctttg
     3181 caatgcacca gcgacattca gccaagcctg tcttacccac cagtggctgg aaagctttgg
     3241 gaggtgaaga tgacctggcc aaacgagaag atgagtttgt ggacctaggg gacgtgtgac
     3301 tctcttctca gggactgtga aagaggcaca ctgtacggtg ggacaattgt tcctggactg
     3361 gtgtcacgat gttagctcag tgctgtgaag gagagagcag ggctttcagg aagagagctg
     3421 gttctccttt tcttccacag ttctggaaga cagcgcaaca aagccatgcc tctaggatgc
     3481 ataggaggga gttcctactt gacctgtcat aggattgggg tcatttcctg acatctgtat
     3541 tatatgtaca cacaatggct cgtggccagg ctgctgtgag agcctcctga tttctctgtg
     3601 ccaagataat tacatagcca tttcgaacaa gagtaagggc agctttatgc ggcatctaag
     3661 tggagagaca gaggattaag agatgtgctt tgtcttaaac catattccag cgtgcacaca
     3721 cacacatgca cgcaccacag aaaagttgac agttcttctg gtgtcatcca tcctaatgtt
     3781 cagtccctcc ttcctgaact gtaacaaggc acagggtggg tggggcagcc gccttccctt
     3841 ttcctttgct gtcattccca tcttaccttt tcctgttctg tgccattctg ggggtccact
     3901 cggtgcacat catcccaggg tcttgttgct gacctgggga aggtcctctg gcttccacgg
     3961 gggagctctt ggagccctgt tttgttcttt tctttttttt tttttttttt ggttcttttt
     4021 tttccggagc tggggaccga acccagggcc ttgcgcttcc taggtaagcg ctctaccact
     4081 gagctaaatc cccagcccct ggagccctgt tttgactgca cacttggctc tctgctcgaa
     4141 taccaaggct cggggcacct agagactctc agcagcccct cagctccctt tgcctcccca
     4201 ctaccctcat gatgctgggg caagcaggac aattcgaatg tggctctcac aggaaagcag
     4261 ccatgtcagc agcaattatc acaggatgcc tcagtgattg aaaaagccat agaagggaac
     4321 tcagccctgc ctagtcaccg tgggtctgct gtgttaaaga tacatatttt cttactgttt
     4381 gaaagcatac tttgtaaggc ttcatgctgt cattctcaac aaagctctgt ccagtcccac
     4441 agaagtgtag agaagaggga gtgggcaagg gacctcactg agactgcctc acatgtttgc
     4501 cttttttctc tatttgctgg tagggagagg tcctgttagg aaatctctgt tgctcatggg
     4561 caataaggca ttttggaact taacaaaaag tcctttctga ttgcactgaa ttatctttca
     4621 tatgtagtga tcatttttcc tcggctccct ccacagtagc gcacagtctg ggttggcgtg
     4681 ttgactcagc atgttggggg gtgggggtca agatctgtgt ttctgggacc aaatgcactc
     4741 agtctcggtt gccttaagaa tctttcaggc caggcctgcg ctaggagtgc gctagggatc
     4801 tagaacacgc ccgttcctag ctgcctacct tgtgttcctt gggctctctt aagctagcgc
     4861 taactgccac gccctcagcc tctgcttcac aagtcctcag tggagagaac tatttttgtt
     4921 accgtattat agcatgaata tttatatggt agcctctgca gtcttagtga tttctctccc
     4981 ccccccccaa aaaaaaattg cctcatgtga tgttttatac ttcacaaagt atggtttaaa
     5041 ggcacaaggt catcatcctt gttatatcag ttgaatgtgc attgaaatat ttttctatgc
     5101 tttttttaaa tcacaataga aaaggtaaac aagctgttgc aacctgtgtg gttacgacaa
     5161 tttatgttat gtatttatat ttgaaaccag atttctataa cttgcatttc tgtacagaac
     5221 tttccatagg tttatatatt gtgtattttt attcaagatt gagatgtggt ttatgtttaa
     5281 cattaaaaga taaaataaga ccctttgttt aaaacacact gtgcaagttt ggaagtgtct
     5341 gttaataatt tactgtatat aatacttgcc tttgtttata cctccaagtt tttacactga
     5401 agataaacta gctttaatta aattttaaaa atttaaggga ataagctgtt cggctgagtc
     5461 agtttaaatg tgcagtttat tttcggggtg ttggtggaag tttatacatg cctcactgca
     5521 ttgtaactga ctgcagagat taaagaacaa ctttcaatca gcgccataa
//
