LOCUS       NM_001191096            2713 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus myotubularin related protein 11 (Mtmr11), mRNA.
ACCESSION   NM_001191096 XM_001069837
VERSION     NM_001191096.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2713)
  AUTHORS   Kang,D., Oh,S., Ahn,S.M., Lee,B.H. and Moon,M.H.
  TITLE     Proteomic analysis of exosomes from human neural stem cells by flow
            field-flow fractionation and nanoflow liquid chromatography-tandem
            mass spectrometry
  JOURNAL   J Proteome Res 7 (8), 3475-3480 (2008)
   PUBMED   18570454
REFERENCE   2  (bases 1 to 2713)
  AUTHORS   Lorenzo,O., Urbe,S. and Clague,M.J.
  TITLE     Systematic analysis of myotubularins: heteromeric interactions,
            subcellular localisation and endosome related functions
  JOURNAL   J Cell Sci 119 (Pt 14), 2953-2959 (2006)
   PUBMED   16787938
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Jul 17, 2010 this sequence version replaced XM_001069837.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.95754.1,
                                           SRR26360194.2348862.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMEA5760393
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-198               JAXUCZ010000002.1  186412407-186412604
            199-289             JAXUCZ010000002.1  186413014-186413104
            290-411             JAXUCZ010000002.1  186413461-186413582
            412-472             JAXUCZ010000002.1  186413829-186413889
            473-615             JAXUCZ010000002.1  186414026-186414168
            616-694             JAXUCZ010000002.1  186414579-186414657
            695-830             JAXUCZ010000002.1  186414758-186414893
            831-918             JAXUCZ010000002.1  186415094-186415181
            919-1007            JAXUCZ010000002.1  186415305-186415393
            1008-1132           JAXUCZ010000002.1  186415477-186415601
            1133-1199           JAXUCZ010000002.1  186417057-186417123
            1200-1270           JAXUCZ010000002.1  186417315-186417385
            1271-1437           JAXUCZ010000002.1  186417874-186418040
            1438-1611           JAXUCZ010000002.1  186418254-186418427
            1612-1794           JAXUCZ010000002.1  186419083-186419265
            1795-2088           JAXUCZ010000002.1  186419649-186419942
            2089-2713           JAXUCZ010000002.1  186420400-186421024
FEATURES             Location/Qualifiers
     source          1..2713
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..2713
                     /gene="Mtmr11"
                     /note="myotubularin related protein 11"
                     /db_xref="GeneID:689613"
                     /db_xref="RGD:1589965"
     exon            1..198
                     /gene="Mtmr11"
                     /inference="alignment:Splign:2.1.0"
     CDS             133..2235
                     /gene="Mtmr11"
                     /codon_start=1
                     /product="myotubularin-related protein 11"
                     /protein_id="NP_001178025.1"
                     /db_xref="GeneID:689613"
                     /db_xref="RGD:1589965"
                     /translation="MWWGGRGQSFNIAPQKEEPELGFSGPKSDPGNRMPEPSSHQLGS
                     CLASGCLPGEHILAWAPGRRKGPGLELPGTLICTNFRVTFQPCGWQRNQDTPLSSEYD
                     FALINIGRLEAVSGLSRVQLLRPGSQLKFIPEEVLIHGRDFRLLRIGFEAGGLAPQAF
                     QVTMAIIQARAQSSQVQQYRGITLSKAGKVSGSRKPPIPLLETLEDWETERKKQGARG
                     WRVSMVNERFDVATSLSGYFWVPNRILDSEVRRAFAHFHQGRGPRLSWHHPGGSDLLR
                     CAGFYIASDPNKEDIRAVELMLQAGHSDVVLVDTMDEMPSLADVQLAHLKLRALCLPD
                     SSVAEDKWLSALEGTRWLDYVRSCLRKASDISVLVTSRVRSVVLQERGDRDFNGLLSS
                     LVQLLLAPEARTLFGFQSLVQREWVAAGHPFLTRLGETGASEEAPVLPLFLDCAWQLL
                     QQFPAEFEFSEFFLLALHDSIRVPDTLTFLRNTPWERGKKSGQFNSYTQVYTPEYSQP
                     LAGSPANLHLSVWDWDLRYSKEQISQFLNPGYDPEHCPDSGLPRQQPSLMVPGSPSSM
                     WLFSRGALTPLNQLCPWQDSTSLLTVSSHWLPRPARSSESLADQEWGLPSHWGACPLP
                     PGLLLPGYLGPQIRFWKRCYLRGRPEVQIGSSALTISGLQDELSHLQELLRKWTPRIS
                     PEDHSKKRDPNTILSQIC"
     exon            199..289
                     /gene="Mtmr11"
                     /inference="alignment:Splign:2.1.0"
     exon            290..411
                     /gene="Mtmr11"
                     /inference="alignment:Splign:2.1.0"
     exon            412..472
                     /gene="Mtmr11"
                     /inference="alignment:Splign:2.1.0"
     exon            473..615
                     /gene="Mtmr11"
                     /inference="alignment:Splign:2.1.0"
     exon            616..694
                     /gene="Mtmr11"
                     /inference="alignment:Splign:2.1.0"
     exon            695..830
                     /gene="Mtmr11"
                     /inference="alignment:Splign:2.1.0"
     exon            831..918
                     /gene="Mtmr11"
                     /inference="alignment:Splign:2.1.0"
     exon            919..1007
                     /gene="Mtmr11"
                     /inference="alignment:Splign:2.1.0"
     exon            1008..1132
                     /gene="Mtmr11"
                     /inference="alignment:Splign:2.1.0"
     exon            1133..1199
                     /gene="Mtmr11"
                     /inference="alignment:Splign:2.1.0"
     exon            1200..1270
                     /gene="Mtmr11"
                     /inference="alignment:Splign:2.1.0"
     exon            1271..1437
                     /gene="Mtmr11"
                     /inference="alignment:Splign:2.1.0"
     exon            1438..1611
                     /gene="Mtmr11"
                     /inference="alignment:Splign:2.1.0"
     exon            1612..1794
                     /gene="Mtmr11"
                     /inference="alignment:Splign:2.1.0"
     exon            1795..2088
                     /gene="Mtmr11"
                     /inference="alignment:Splign:2.1.0"
     exon            2089..2713
                     /gene="Mtmr11"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccaagtgccg ctacccttgt gtcctcccca gcctttctcc ccagctctag gatttagact
       61 ctccccagag agagcgagca tctttgaaga ctcctaccct tagctgctcc agtcccggat
      121 ggagccaggg aaatgtggtg ggggggtcgg ggccagagtt tcaacattgc cccccagaag
      181 gaggagccag agctggggtt ctctggaccg aagtctgacc cagggaacag gatgccggag
      241 cctagcagtc atcaactagg cagctgcctg gcctctggtt gcctcccagg ggagcatatc
      301 ctagcatggg caccaggacg gaggaaaggg ccaggactag aactgcctgg aactctgatc
      361 tgcactaact ttagggtgac cttccagcct tgtggatggc agcgaaatca ggatactcca
      421 ctgagtagtg aatatgattt tgccctgatc aacattgggc gattagaggc tgtgagtggc
      481 ttgtccagag tgcagcttct ccgtccgggg tctcagctta agttcattcc ggaagaggtt
      541 ctgattcacg gcagagactt ccggctgctt agaattggtt ttgaggctgg agggctggca
      601 cctcaggcct tccaggtaac catggccatc attcaagcca gagctcagag cagtcaagtc
      661 cagcagtaca gaggaataac cctgagcaaa gctggcaagg tttctggctc cagaaagcca
      721 cccattcctc tcttggagac tttagaagac tgggaaacag aacgaaagaa gcaaggggcc
      781 agaggctgga gggttagcat ggtcaatgag aggttcgatg ttgctaccag tctctcaggt
      841 tacttctggg tccctaatcg aattctggac agtgaggtca gaagagcatt tgcacatttc
      901 catcagggcc gtggaccgcg cctgtcctgg caccacccgg gaggcagtga ccttctccga
      961 tgtgcagggt tctatatagc cagtgacccg aacaaagaag acatcagagc agtggagtta
     1021 atgctacagg ctgggcactc tgatgttgtc ttggtagaca ccatggatga gatgcctagt
     1081 cttgctgatg tccaacttgc ccacttgaaa ctgagggccc tttgcctgcc tgactcatct
     1141 gtagctgaag ataaatggct ctcagccttg gaaggaacac ggtggttgga ctatgtcagg
     1201 tcttgtcttc gaaaggccag cgacatctca gtactagtga cgtcccgggt ccgttctgta
     1261 gtgcttcaag agcgtggtga tcgtgatttc aatggcctcc tctcttcact cgtccagctg
     1321 cttttggccc cggaagcccg gacattgttt ggtttccagt cactagtgca acgagagtgg
     1381 gtggcagctg gacacccttt cctgaccagg cttggggaaa ctggggccag tgaggaggct
     1441 ccggtgctcc ctctcttcct tgactgtgcc tggcagcttc tccagcagtt tccagctgaa
     1501 tttgaattct ccgagttttt ccttcttgct cttcacgaca gcatcagggt tccggacacc
     1561 ctcacctttc tgagaaacac tccctgggag cgcgggaaga agagtggaca gttcaactca
     1621 tatacacaag tttacacccc cgagtactcc cagcccctag ctggaagccc ggctaattta
     1681 catctgtccg tctgggactg ggatttacgc tacagcaagg aacagatatc acagttcctt
     1741 aatcctggct acgatccgga acattgccca gacagcgggc tccctagaca gcagccaagc
     1801 ctcatggttc ctggatcccc cagttctatg tggctgttct ccagaggggc cctgaccccc
     1861 ctgaatcagc tctgtccttg gcaagacagc acttccttgc tgacagtctc ttctcattgg
     1921 ctccctcgac cggctagatc ctctgaaagc ctagctgacc aggaatgggg gctcccctca
     1981 cattggggag cctgcccttt acctcctggg ctactgctgc ctggatattt gggaccacag
     2041 atcaggttct ggaaacgctg ttacctgagg ggaaggccgg aggtccagat aggctcttca
     2101 gctctcacaa tctctggcct tcaagatgag ctgtctcatc ttcaggaact attaagaaaa
     2161 tggacaccaa gaatatctcc ggaggaccac agcaagaaaa gagatccaaa tactatcctt
     2221 tctcagatct gctgaaactg ctagccatct caaaggcagg gcagagggcg ggggtttgtt
     2281 tctgctgatg tttatgtctg accttggtgc ttcgggtttg gtattccagt ctgtaaagct
     2341 cacttagtag gccagtttct gtagatggtg ctaccaacct ccagctctcc tgtctcgttt
     2401 ggttcctgga gctatttttg tttcttgtga tttgaaaaat aagaaacaaa accaattcag
     2461 aatgattgcc ttttttcgag gcaattctgt gccatttgga tggttgtcaa aagtatgata
     2521 tcagagaccc ttttcatcag ccccagcaag gtgtcctaga gacctcattc tcaacccctc
     2581 aacactacat tgaaatcttt tcttagtctt ctgtgggaat gaggtgaata agggagacac
     2641 ctcctcctcc cactgtatat ttttgtagca gcatttctat ttaaggagtt cattaaagca
     2701 cagtatttct aca
//
