LOCUS       NM_001100846            4644 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus myotubularin related protein 10 (Mtmr10), mRNA.
ACCESSION   NM_001100846 XM_001058490 XM_219705
VERSION     NM_001100846.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4644)
  AUTHORS   Lorenzo,O., Urbe,S. and Clague,M.J.
  TITLE     Systematic analysis of myotubularins: heteromeric interactions,
            subcellular localisation and endosome related functions
  JOURNAL   J Cell Sci 119 (Pt 14), 2953-2959 (2006)
   PUBMED   16787938
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before May 13, 2010 this sequence version replaced
            XM_001058490.2, XM_219705.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.2642.1,
                                           SRR26643429.2119.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-71                JAXUCZ010000001.1  127271139-127271209
            72-132              JAXUCZ010000001.1  127271701-127271761
            133-269             JAXUCZ010000001.1  127282106-127282242
            270-342             JAXUCZ010000001.1  127284279-127284351
            343-485             JAXUCZ010000001.1  127284937-127285079
            486-576             JAXUCZ010000001.1  127292367-127292457
            577-757             JAXUCZ010000001.1  127298046-127298226
            758-845             JAXUCZ010000001.1  127301388-127301475
            846-934             JAXUCZ010000001.1  127301558-127301646
            935-1065            JAXUCZ010000001.1  127302771-127302901
            1066-1135           JAXUCZ010000001.1  127303866-127303935
            1136-1206           JAXUCZ010000001.1  127304589-127304659
            1207-1376           JAXUCZ010000001.1  127309924-127310093
            1377-1547           JAXUCZ010000001.1  127317162-127317332
            1548-1730           JAXUCZ010000001.1  127318954-127319136
            1731-4644           JAXUCZ010000001.1  127319708-127322621
FEATURES             Location/Qualifiers
     source          1..4644
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q22"
     gene            1..4644
                     /gene="Mtmr10"
                     /gene_synonym="RGD1305958"
                     /note="myotubularin related protein 10"
                     /db_xref="GeneID:309255"
                     /db_xref="RGD:1305958"
     exon            1..71
                     /gene="Mtmr10"
                     /gene_synonym="RGD1305958"
                     /inference="alignment:Splign:2.1.0"
     CDS             12..2327
                     /gene="Mtmr10"
                     /gene_synonym="RGD1305958"
                     /codon_start=1
                     /product="myotubularin-related protein 10"
                     /protein_id="NP_001094316.1"
                     /db_xref="GeneID:309255"
                     /db_xref="RGD:1305958"
                     /translation="MFSLKPPRPSFRSYLLPPPQTDDKISSEPKIKKLEPVLLPGEIV
                     VNEVNFVRKCIATDTSQYDLWGKLICSNFKISFITDDPMPLQKFHYRNLLLGEHDVPL
                     TCIEQIVTVNDHKRKQKVLGPNQKLKFNPTELIIYCKDFRIVRFRFDESGPESAKKVC
                     LAIAHYSQPTDLQLLFAFEYVGKKYHNSANKVNGVSSGGGGVWSGAGSPSSQRTPLFE
                     TYSDWDRETKRTGASGWRVCSINEGYMISTCLPEYFVVPSSLADQDLKIFSPSFVGRR
                     MPCWCWSHSNGSALVRMALIKDVLQQRKIDQRICNAITKSHPQRSDVYKSDLDKTLPN
                     IQEIQAAFVKLKQLCVNEPFEETEEKWLSSLESTRWLEYVRAFLKHSAELVYILESQR
                     LSVVLQEEEGRDLSCLVASLVQVMMDPYFRTITGFQSLVQKEWVMAGYPFLDRCNHLK
                     RSEKESPLFLLFLDTTWQLLEQYPAAFEFSETYLAVLCDSTRISLFGTFLFNSPHQRV
                     KQSTEFAISKNIQLGDEKGLKFPSVWDWSLQFTAKDRTLFHNPYYIGKSTPCIQNGSR
                     KSFKRTKKSYSSTLRGMPSCLKNGLISDQELLPRRNSLILKLKPDPPQHGDSQHSGAE
                     QYFKEWFSRPANLHGIILPRLSGTHIKLWKLCYFRWVPEAQINLGGSIMAFHKLSVLA
                     DEVDKLSRMLRQHHSGPLEACYAELDQSRMYFRATGPHDTLGTPEFLSSSFPFSPVGN
                     LCRRSILGTPLSKFLSGAKIWLSTETLANED"
     exon            72..132
                     /gene="Mtmr10"
                     /gene_synonym="RGD1305958"
                     /inference="alignment:Splign:2.1.0"
     exon            133..269
                     /gene="Mtmr10"
                     /gene_synonym="RGD1305958"
                     /inference="alignment:Splign:2.1.0"
     exon            270..342
                     /gene="Mtmr10"
                     /gene_synonym="RGD1305958"
                     /inference="alignment:Splign:2.1.0"
     exon            343..485
                     /gene="Mtmr10"
                     /gene_synonym="RGD1305958"
                     /inference="alignment:Splign:2.1.0"
     exon            486..576
                     /gene="Mtmr10"
                     /gene_synonym="RGD1305958"
                     /inference="alignment:Splign:2.1.0"
     exon            577..757
                     /gene="Mtmr10"
                     /gene_synonym="RGD1305958"
                     /inference="alignment:Splign:2.1.0"
     exon            758..845
                     /gene="Mtmr10"
                     /gene_synonym="RGD1305958"
                     /inference="alignment:Splign:2.1.0"
     exon            846..934
                     /gene="Mtmr10"
                     /gene_synonym="RGD1305958"
                     /inference="alignment:Splign:2.1.0"
     exon            935..1065
                     /gene="Mtmr10"
                     /gene_synonym="RGD1305958"
                     /inference="alignment:Splign:2.1.0"
     exon            1066..1135
                     /gene="Mtmr10"
                     /gene_synonym="RGD1305958"
                     /inference="alignment:Splign:2.1.0"
     exon            1136..1206
                     /gene="Mtmr10"
                     /gene_synonym="RGD1305958"
                     /inference="alignment:Splign:2.1.0"
     exon            1207..1376
                     /gene="Mtmr10"
                     /gene_synonym="RGD1305958"
                     /inference="alignment:Splign:2.1.0"
     exon            1377..1547
                     /gene="Mtmr10"
                     /gene_synonym="RGD1305958"
                     /inference="alignment:Splign:2.1.0"
     exon            1548..1730
                     /gene="Mtmr10"
                     /gene_synonym="RGD1305958"
                     /inference="alignment:Splign:2.1.0"
     exon            1731..4644
                     /gene="Mtmr10"
                     /gene_synonym="RGD1305958"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcggtggcac catgttctct ctcaagccgc ccagacccag cttcaggtcc tacctcctgc
       61 cgccgcccca gactgacgat aagatcagtt ccgaaccgaa gattaaaaaa ctggagccag
      121 ttcttttgcc aggagaaatt gttgtaaatg aagtcaattt tgtgagaaaa tgcattgcaa
      181 cagacacgag ccagtatgat ttatggggaa agttgatatg cagtaacttc aaaatttcct
      241 ttattacaga tgacccaatg ccattacaga aattccatta cagaaacctt ctccttggag
      301 agcatgatgt ccctttgact tgtattgaac agattgtcac agtgaatgac cacaagagga
      361 aacagaaagt cctaggtccc aaccagaagc tgaaattcaa tccaacagaa ttaattattt
      421 attgtaaaga tttccgaatt gtcagatttc gctttgatga gtcgggtcct gaaagtgcta
      481 agaaggtatg ccttgcaata gctcattatt cccagccaac agacctgcag ctactctttg
      541 catttgaata tgttgggaaa aaataccaca attcagccaa caaagttaat ggagtatcct
      601 caggaggtgg aggagtatgg agtggagctg gcagtcccag cagccagagg acgccgctgt
      661 tcgaaactta ctcagattgg gacagagaga ccaagaggac aggcgcttct gggtggagag
      721 tttgttctat caatgaaggt tacatgatat ctacttgcct tccagaatac tttgtcgtgc
      781 caagttcact agcagaccaa gacctgaaga tcttttctcc ttcttttgtt ggaagaagaa
      841 tgccatgctg gtgctggagc cattccaacg gcagtgctct tgtgcgaatg gctctcatca
      901 aagatgtgct gcagcagagg aagatcgacc agaggatttg caatgctata actaaaagtc
      961 atccacagag aagtgatgtt tacaagtcag atttggataa gactttgccc aatatccaag
     1021 aaatacaagc ggcatttgta aaacttaagc aactgtgtgt caatgagcct tttgaagaaa
     1081 ctgaagagaa gtggttgtct tcactggaaa gtactcggtg gttagaatat gtcagggctt
     1141 tccttaaaca ctcagctgaa cttgtgtaca ttcttgaaag ccagcgtctc tctgtagtcc
     1201 tgcaagagga ggaaggcaga gacttgagtt gtctggtggc gtctcttgtt caagtgatga
     1261 tggatccata cttcaggaca attactggat ttcagagtct ggtacagaag gagtgggtca
     1321 tggcagggta cccgttccta gacagatgta accatttgaa gaggtcagag aaagagtctc
     1381 ctttgttctt gctgttcttg gataccacgt ggcagctgct agagcagtat ccagctgcct
     1441 tcgagttctc cgagacgtac ttagcagtac tgtgtgacag tacccggatc tcgctgttcg
     1501 ggaccttcct gttcaactct cctcatcagc gggtgaagca gagcacagag tttgctatca
     1561 gcaaaaacat tcagctgggt gatgaaaagg gcttgaaatt cccctcagtt tgggactggt
     1621 ctcttcagtt cacggcgaag gaccgtactc ttttccacaa cccctactac attggcaaga
     1681 gtactccttg catacagaat ggctccagga agtcttttaa gcgcacaaag aaaagctaca
     1741 gctccacact gagaggaatg ccctcatgct tgaagaatgg actcatcagt gaccaagaac
     1801 tgcttccgcg gagaaactca ctgatattga agttgaagcc agacccgcct cagcacggcg
     1861 acagccagca cagtggagca gagcagtatt ttaaagagtg gttttccaga ccagccaatc
     1921 tacacggcat tatcctgcca cgtctctctg gaacacacat aaaattgtgg aaactgtgtt
     1981 acttccgctg ggtccctgag gcccagatca accttggggg ctccatcatg gccttccaca
     2041 agctgtctgt cctggctgac gaggtggaca agctcagcag gatgctgagg cagcatcaca
     2101 gcggcccctt agaagcctgc tacgcagagt tggaccagag caggatgtac tttagggcca
     2161 cagggccaca tgacacgcta gggacaccag agttcctctc ctcttcattt ccattttctc
     2221 ctgtaggaaa tctgtgcaga cgaagcattt taggaacacc attaagcaaa tttttaagtg
     2281 gggccaaaat atggttatct actgagacac tagcaaatga agactaaggt attttctgta
     2341 tatattgaga ggagctggac ctgtccctct ccaaactgaa attgctaact gaggtgtcga
     2401 aaactggcca tttcatatgt aaggaatttg cactaatatt taaatcatgt ttagtcatgc
     2461 tgccttcagt tttcctgagg gcagtgtgac ttgtgggttt tgtcctttat cctctgggtc
     2521 tggctcacgt gggtcactgc agcacgagtt ccccatagtg atcacaatgc ccgggtttct
     2581 ctgcagattc tgccaacatc tgctttccta ccacctactg aaggttgtct gatagtcaga
     2641 ttacaacccc gagatggtgg acagggaagt tagtaagtta gtgtatttac tgcatttcca
     2701 gatcatctga gaaaactcct aataggcctc agttggcatc catgtattta gctaatatct
     2761 tagcttgtgt tctggggtta gatattatta ttttagctca cctcagttag gacctaagat
     2821 cactgtgttt ccaaatcatg aatttgcttt aattccatac aactaacttt taaaagatgc
     2881 actgtaattt taaagcattc actgtagcta tttaaaccta gaagtgcctt tgacgttaag
     2941 ataaaagtga caagctagaa taagaaggaa atataattct aaaagttagg gtctttagac
     3001 cccactgtat attggaaata gctttttgcc aacaagctta caccaacagc caggagtctc
     3061 tagagccctg cagtcttcga ggctcttcag gtagcagagg cccagctcca gctgtggctg
     3121 agggtgccca ggccatgggc aggagcgtgc catactgacc acaggccgtg ggagttctgg
     3181 cctcctaatg agcacttcag ctggcatgct gacacaggcc gacacttctc cctagaagta
     3241 actggcgggg gtcacgagat ggacacatgc actgactgga aaggacgacc tccacagttg
     3301 ccattttaat acacagagat gcaccacctc caggcttggg ggcaatgcca agaggctgag
     3361 attctgataa gaacctggcc aacgtcacaa agccctgtgc tcctgtcctc tcgagtgctc
     3421 atgggcttct tctcccagtt aaaggtggcc atgcccttgt gcacgatgcc gtgtcttcag
     3481 tcgccacctt ggattttgag atactttata gtaaagtgtt gatttagttt gtttcttttt
     3541 ctaaagcaga atttctcaaa atagtttgac ttgtatgtgc tgtgtagcca tttctactta
     3601 attaaccttt tctaactgtt taataatgtc tctgcattta acagagcaga tgttctcatg
     3661 tcttaacaag ttcttatctt atggctaaac ttaatgtttt cactcatccg ttgcctataa
     3721 aatgagggct cttgacaact tacacaaata gcattatcag cagtgaggat gcaccggccc
     3781 ttggccacac acagctagcc ctggtccctg agacacgaca gggtgtcacc actggagcca
     3841 gacagtaatc tcccattttc atgaagctgc tttgctactt ctataagttg ttctaaattt
     3901 atgttgtggt tgagaattcc tttctttgta attttcatcc ctaacattga cttcaactcc
     3961 tttcagaact tttttggtaa cttaaagaag gtcaggtact attaacacta ctttatgatg
     4021 gaaattgcat atttttgtat ggtaaagttg taaatttttc tattttgact gggtggttgt
     4081 tccatcacga ttactgtgct acagcttact atgtctaata tgtgaagcag ccccagagtc
     4141 ctagtgtggc ctatgggaca gcggcctggc acctgctaac aaaagcgacc ctgtggtggc
     4201 agaagaggta agcatggctg catgcagcaa accaaagagc tcagtagcac agtctccgag
     4261 gccacagggc agagcctgtg ctggccgtgc ccatgcaggg gctgccgaca ctgggtgttc
     4321 taatgctgac tccacaggtg aggtgtcttg ctttatgatg ggaaccaatt ctaaaaccaa
     4381 aaatgcctaa ctctacttaa ggaaaggaca ttaatttgta ctgacagaag atgaaaagtg
     4441 tttagcacat ttttcaacaa ggtcctcctg ctgtagcagt tacctcaagt gattaaaact
     4501 tggtgtcgag acaaaactaa aacctttgtg cctaaataca actgatgacc tgaagcagga
     4561 tgagcaggtt gactggatac tgctcaacag aatggatgta aagggaattc tgatggctaa
     4621 ataaaatttc catggaaacc gttt
//
