LOCUS       XM_039092125            2195 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus mitochondrial translational initiation
            factor 2 (Mtif2), transcript variant X8, mRNA.
ACCESSION   XM_039092125
VERSION     XM_039092125.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2195
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2195
                     /gene="Mtif2"
                     /note="mitochondrial translational initiation factor 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 11 ESTs, 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 33 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:305606"
                     /db_xref="RGD:1303046"
     CDS             273..2168
                     /gene="Mtif2"
                     /codon_start=1
                     /product="translation initiation factor IF-2,
                     mitochondrial isoform X2"
                     /protein_id="XP_038948053.1"
                     /db_xref="GeneID:305606"
                     /db_xref="RGD:1303046"
                     /translation="MTVEELARAMAKDTDCVYEALLNTAIDIDSLEANSHLDEVWIKE
                     VIKKAGMKLKWSKLKLERIRENKDAVRRPGADPALLKPRSPVVTIMGHVDHGKTTLLD
                     KLRETQVAAMEVGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGAQVTDIVV
                     LVVAADDGVMKQTVESIQHAKDAGVPIILAINKCDKTDADPEKVKKELLAYDVVCEEY
                     GGDVQAVHVSALTGKNLMALAEATIALAEMLELKADPTGPVEGTVIESFTDKGRGPVT
                     TAIIQRGTLKKGSILVAGKSWAKVRLMFDENGKTVNEAYPSMPVGIIGWRDLPSAGDE
                     ILEVQSEPRAREVVDWRKSEQKEEKGKDDLKIMEEKRKEHQEAHRKAREKYGSLHWKQ
                     RSYIKYLERKEQRPLKPKEKVERDSNVLPIIIKGDVDGSVEAILNLLDTYDASHECEL
                     ELVHFGLGDISENDVTFAETFDGVIYGFNVDAGSAIQQSAAQKGVKIKLHKIIYHLIE
                     DLQEELSNRLPYKVEEYPIGEASILATFTITEGKKKVPVAGCRVQKGQLERQKKFKLI
                     RNGQVIWKGSLTSLKHHKDDVLVIKTGVDCGLSLDEENVEFKVGDQVICYEENKVPTK
                     TSWDPGF"
ORIGIN      
        1 gcaggccacc ggctgaagac tgcaggttac aggagtaggg gcagccggcc tccgccggcc
       61 tctatcagcc acagacaacc cggaattcag tgggaaagct gcttccggcg gtaccggaag
      121 caccacgggg accttgcgga aggaacggac tgagtgaccc acagttctcc tgggtccgga
      181 aggcgacctc gcctgggaac tgagaaaaac gaccaccgag atctcagttg tctccaataa
      241 aaactaaaaa agaggtagaa gtatgggttg gaatgactgt tgaagaacta gccagagcaa
      301 tggcaaaaga cacagattgt gtatatgaag ctttattgaa caccgccatt gacatagact
      361 cactagaagc aaactcacat ttagacgaag tctggatcaa agaagttata aagaaggcag
      421 gaatgaagct gaaatggagc aaattaaaac tggagagaat aagagaaaat aaggatgctg
      481 tgagaaggcc tggggcagat ccagctttac taaagccaag gtccccagtt gttactataa
      541 tgggtcatgt tgatcatggg aaaacgacct tacttgacaa acttcgggaa actcaagtgg
      601 cagcgatgga agttggaggc attactcaac atattggtgc ttttcttgtc tctctgcctt
      661 ctggagaaaa gataaccttt cttgatactc cgggacatgc tgctttctca gcaatgagag
      721 ctagaggagc tcaggtcact gacattgttg tgttggttgt agctgcagat gatggggtaa
      781 tgaaacaaac tgtggaatcc attcagcacg ccaaggatgc aggagttcct attatccttg
      841 caataaataa atgtgacaag acagatgctg atcctgaaaa ggtgaaaaaa gagctcctgg
      901 cttatgatgt ggtgtgtgaa gagtatggtg gtgatgttca agcagtgcac gtctctgcac
      961 taacaggaaa gaacctgatg gctttggcag aagcaacaat tgctctcgca gaaatgttgg
     1021 aactgaaagc agatcccaca ggcccagtgg aaggaacagt aatagagtct ttcacagaca
     1081 aaggaagagg tcctgttaca acagctataa ttcaaagagg aactctgaaa aaaggctcaa
     1141 ttctagttgc tgggaagagt tgggcaaaag ttcgactaat gtttgatgaa aatggaaaaa
     1201 cagttaatga ggcctatcct agcatgccag tgggaatcat aggctggaga gacctccctt
     1261 ctgcaggaga tgaaattctt gaagtacagt ctgagccaag ggcccgtgaa gttgttgact
     1321 ggaggaagtc tgagcaaaaa gaagaaaagg gcaaagatga cctgaaaata atggaagaaa
     1381 agcgaaagga acaccaagaa gcacatcgga aagcccgtga gaagtatggc agcctgcact
     1441 ggaagcagag atcatatata aagtaccttg aaagaaaaga acagagaccc ttaaagccca
     1501 aagaaaaggt agaaagggac tcaaatgtac ttcctataat tattaaaggt gacgttgatg
     1561 ggtctgtgga ggccatcttg aaccttctgg atacctatga tgcttcccat gaatgtgaac
     1621 tagaattagt gcattttgga ttgggtgaca tcagtgaaaa tgatgttacc tttgctgaga
     1681 catttgatgg tgttatttat ggctttaatg tggatgcagg cagtgctatc cagcagtcag
     1741 ctgcacaaaa gggagtcaag attaaacttc acaaaatcat ctaccatctt attgaagatt
     1801 tgcaggagga actaagcaac agattgccct acaaggtgga ggagtaccca ataggtgagg
     1861 cttctatact agctaccttc actataacag aagggaagaa aaaagttcct gttgctggct
     1921 gcagagttca aaagggacag ctagaaagac agaagaagtt taaattaatc cgcaacggcc
     1981 aagttatttg gaagggctca ttaacttcgc tgaaacacca taaagatgac gttttagtta
     2041 taaaaactgg tgtggactgt ggtcttagtt tagatgaaga aaacgtagaa tttaaagtgg
     2101 gcgatcaagt tatctgttat gaagaaaata aagtaccaac taagacttcc tgggatccag
     2161 gattttaaat gtgcattaaa aatggtaaaa atgta
//
