LOCUS       XM_039092122            2488 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus mitochondrial translational initiation
            factor 2 (Mtif2), transcript variant X5, mRNA.
ACCESSION   XM_039092122
VERSION     XM_039092122.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092122.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2488
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2488
                     /gene="Mtif2"
                     /note="mitochondrial translational initiation factor 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 11 ESTs, 2 long SRA reads, 10 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 48 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:305606"
                     /db_xref="RGD:1303046"
     CDS             278..2461
                     /gene="Mtif2"
                     /codon_start=1
                     /product="translation initiation factor IF-2,
                     mitochondrial isoform X1"
                     /protein_id="XP_038948050.1"
                     /db_xref="GeneID:305606"
                     /db_xref="RGD:1303046"
                     /translation="MNQKLLKLEKLLRFHTICRQLHSLSQRRLLAWWKHGSAPASPVW
                     ADWLCARPWPTDVLTGSALHQHRLLVTKKEKRPPRSQLSPIKTKKEVEVWVGMTVEEL
                     ARAMAKDTDCVYEALLNTAIDIDSLEANSHLDEVWIKEVIKKAGMKLKWSKLKLERIR
                     ENKDAVRRPGADPALLKPRSPVVTIMGHVDHGKTTLLDKLRETQVAAMEVGGITQHIG
                     AFLVSLPSGEKITFLDTPGHAAFSAMRARGAQVTDIVVLVVAADDGVMKQTVESIQHA
                     KDAGVPIILAINKCDKTDADPEKVKKELLAYDVVCEEYGGDVQAVHVSALTGKNLMAL
                     AEATIALAEMLELKADPTGPVEGTVIESFTDKGRGPVTTAIIQRGTLKKGSILVAGKS
                     WAKVRLMFDENGKTVNEAYPSMPVGIIGWRDLPSAGDEILEVQSEPRAREVVDWRKSE
                     QKEEKGKDDLKIMEEKRKEHQEAHRKAREKYGSLHWKQRSYIKYLERKEQRPLKPKEK
                     VERDSNVLPIIIKGDVDGSVEAILNLLDTYDASHECELELVHFGLGDISENDVTFAET
                     FDGVIYGFNVDAGSAIQQSAAQKGVKIKLHKIIYHLIEDLQEELSNRLPYKVEEYPIG
                     EASILATFTITEGKKKVPVAGCRVQKGQLERQKKFKLIRNGQVIWKGSLTSLKHHKDD
                     VLVIKTGVDCGLSLDEENVEFKVGDQVICYEENKVPTKTSWDPGF"
ORIGIN      
        1 tgcaggccac cggctgaaga ctgcaggtta caggagtagg ggcagccggc ctccgccggc
       61 ctctatcagc cacagacaac ccggaattca gtgggaaagc tgcttccggc ggtaccggaa
      121 gcaccacggg gaccttgcgg aaggaacgga ctgagtgacc cacagttctc ctgggtccgg
      181 aaggcgacct cgcctgggaa ctgaagtgag gcccattgga caagagtgac ttgttcctcc
      241 ctgacaatgc tggctgatct gtgagagcag gagaaacatg aaccagaagc tactgaagtt
      301 ggaaaagttg ctacgatttc acactatttg taggcaattg cacagcctga gtcaaagaag
      361 attgttagca tggtggaagc atgggtctgc accggcttcc ccagtgtggg cagattggct
      421 gtgtgcccgg ccttggccga cagacgtgct tactggttca gctttgcatc agcacagact
      481 tcttgttaca aagaaggaaa aacgaccacc gagatctcag ttgtctccaa taaaaactaa
      541 aaaagaggta gaagtatggg ttggaatgac tgttgaagaa ctagccagag caatggcaaa
      601 agacacagat tgtgtatatg aagctttatt gaacaccgcc attgacatag actcactaga
      661 agcaaactca catttagacg aagtctggat caaagaagtt ataaagaagg caggaatgaa
      721 gctgaaatgg agcaaattaa aactggagag aataagagaa aataaggatg ctgtgagaag
      781 gcctggggca gatccagctt tactaaagcc aaggtcccca gttgttacta taatgggtca
      841 tgttgatcat gggaaaacga ccttacttga caaacttcgg gaaactcaag tggcagcgat
      901 ggaagttgga ggcattactc aacatattgg tgcttttctt gtctctctgc cttctggaga
      961 aaagataacc tttcttgata ctccgggaca tgctgctttc tcagcaatga gagctagagg
     1021 agctcaggtc actgacattg ttgtgttggt tgtagctgca gatgatgggg taatgaaaca
     1081 aactgtggaa tccattcagc acgccaagga tgcaggagtt cctattatcc ttgcaataaa
     1141 taaatgtgac aagacagatg ctgatcctga aaaggtgaaa aaagagctcc tggcttatga
     1201 tgtggtgtgt gaagagtatg gtggtgatgt tcaagcagtg cacgtctctg cactaacagg
     1261 aaagaacctg atggctttgg cagaagcaac aattgctctc gcagaaatgt tggaactgaa
     1321 agcagatccc acaggcccag tggaaggaac agtaatagag tctttcacag acaaaggaag
     1381 aggtcctgtt acaacagcta taattcaaag aggaactctg aaaaaaggct caattctagt
     1441 tgctgggaag agttgggcaa aagttcgact aatgtttgat gaaaatggaa aaacagttaa
     1501 tgaggcctat cctagcatgc cagtgggaat cataggctgg agagacctcc cttctgcagg
     1561 agatgaaatt cttgaagtac agtctgagcc aagggcccgt gaagttgttg actggaggaa
     1621 gtctgagcaa aaagaagaaa agggcaaaga tgacctgaaa ataatggaag aaaagcgaaa
     1681 ggaacaccaa gaagcacatc ggaaagcccg tgagaagtat ggcagcctgc actggaagca
     1741 gagatcatat ataaagtacc ttgaaagaaa agaacagaga cccttaaagc ccaaagaaaa
     1801 ggtagaaagg gactcaaatg tacttcctat aattattaaa ggtgacgttg atgggtctgt
     1861 ggaggccatc ttgaaccttc tggataccta tgatgcttcc catgaatgtg aactagaatt
     1921 agtgcatttt ggattgggtg acatcagtga aaatgatgtt acctttgctg agacatttga
     1981 tggtgttatt tatggcttta atgtggatgc aggcagtgct atccagcagt cagctgcaca
     2041 aaagggagtc aagattaaac ttcacaaaat catctaccat cttattgaag atttgcagga
     2101 ggaactaagc aacagattgc cctacaaggt ggaggagtac ccaataggtg aggcttctat
     2161 actagctacc ttcactataa cagaagggaa gaaaaaagtt cctgttgctg gctgcagagt
     2221 tcaaaaggga cagctagaaa gacagaagaa gtttaaatta atccgcaacg gccaagttat
     2281 ttggaagggc tcattaactt cgctgaaaca ccataaagat gacgttttag ttataaaaac
     2341 tggtgtggac tgtggtctta gtttagatga agaaaacgta gaatttaaag tgggcgatca
     2401 agttatctgt tatgaagaaa ataaagtacc aactaagact tcctgggatc caggatttta
     2461 aatgtgcatt aaaaatggta aaaatgta
//
