LOCUS       XM_039092119            3026 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus mitochondrial translational initiation
            factor 2 (Mtif2), transcript variant X2, mRNA.
ACCESSION   XM_039092119
VERSION     XM_039092119.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3026
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3026
                     /gene="Mtif2"
                     /note="mitochondrial translational initiation factor 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 11 ESTs, 1 long SRA read, 10 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 23 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:305606"
                     /db_xref="RGD:1303046"
     CDS             816..2999
                     /gene="Mtif2"
                     /codon_start=1
                     /product="translation initiation factor IF-2,
                     mitochondrial isoform X1"
                     /protein_id="XP_038948047.1"
                     /db_xref="GeneID:305606"
                     /db_xref="RGD:1303046"
                     /translation="MNQKLLKLEKLLRFHTICRQLHSLSQRRLLAWWKHGSAPASPVW
                     ADWLCARPWPTDVLTGSALHQHRLLVTKKEKRPPRSQLSPIKTKKEVEVWVGMTVEEL
                     ARAMAKDTDCVYEALLNTAIDIDSLEANSHLDEVWIKEVIKKAGMKLKWSKLKLERIR
                     ENKDAVRRPGADPALLKPRSPVVTIMGHVDHGKTTLLDKLRETQVAAMEVGGITQHIG
                     AFLVSLPSGEKITFLDTPGHAAFSAMRARGAQVTDIVVLVVAADDGVMKQTVESIQHA
                     KDAGVPIILAINKCDKTDADPEKVKKELLAYDVVCEEYGGDVQAVHVSALTGKNLMAL
                     AEATIALAEMLELKADPTGPVEGTVIESFTDKGRGPVTTAIIQRGTLKKGSILVAGKS
                     WAKVRLMFDENGKTVNEAYPSMPVGIIGWRDLPSAGDEILEVQSEPRAREVVDWRKSE
                     QKEEKGKDDLKIMEEKRKEHQEAHRKAREKYGSLHWKQRSYIKYLERKEQRPLKPKEK
                     VERDSNVLPIIIKGDVDGSVEAILNLLDTYDASHECELELVHFGLGDISENDVTFAET
                     FDGVIYGFNVDAGSAIQQSAAQKGVKIKLHKIIYHLIEDLQEELSNRLPYKVEEYPIG
                     EASILATFTITEGKKKVPVAGCRVQKGQLERQKKFKLIRNGQVIWKGSLTSLKHHKDD
                     VLVIKTGVDCGLSLDEENVEFKVGDQVICYEENKVPTKTSWDPGF"
ORIGIN      
        1 tgcaggccac cggctgaaga ctgcaggtta caggagtagg ggcagccggc ctccgccggc
       61 ctctatcagc cacagacaac ccggaattca gtgggaaagc tgcttccggc ggtaccggaa
      121 gcaccacggg gaccttgcgg aaggaacgga ctgagtgacc cacagttctc ctgggtccgg
      181 aaggcgacct cgcctgggaa ctgaatgatt tacctaatat atctagcctg accttgagct
      241 ccgtatgtaa ccaagactga aaactgcttt gaacttgtca tccttcagcc tttgcctgga
      301 gtcgcctgtg ccagcaggcc tggcttaaat ttgtaagtct tagttcattt atttggaatg
      361 aaatcagaat ttcttttgaa ccttcctttc atgaatgagt ttcaaggtaa aatactaact
      421 atattaacac acacagagcc tcagaattat ctataattga gggagatagt ggcttgtgaa
      481 tgtttttttt ttttcttttc cttttttcgg agctggggac cgaccgaacc cagggcccga
      541 acccagggcc ttgcgcttgc taggcaagcg ctctaccact gagctaaatc cccaacccca
      601 tgaatgtttt taacaacatt catgctagtg aatgttcaaa gtatgtaagt catcaatgag
      661 gaaacaatac atttatcgtc tcactttttt tctttgtaac cttgttatag aaaggctata
      721 gagaagtctt tcttttttac agagtgaggc ccattggaca agagtgactt gttcctccct
      781 gacaatgctg gctgatctgt gagagcagga gaaacatgaa ccagaagcta ctgaagttgg
      841 aaaagttgct acgatttcac actatttgta ggcaattgca cagcctgagt caaagaagat
      901 tgttagcatg gtggaagcat gggtctgcac cggcttcccc agtgtgggca gattggctgt
      961 gtgcccggcc ttggccgaca gacgtgctta ctggttcagc tttgcatcag cacagacttc
     1021 ttgttacaaa gaaggaaaaa cgaccaccga gatctcagtt gtctccaata aaaactaaaa
     1081 aagaggtaga agtatgggtt ggaatgactg ttgaagaact agccagagca atggcaaaag
     1141 acacagattg tgtatatgaa gctttattga acaccgccat tgacatagac tcactagaag
     1201 caaactcaca tttagacgaa gtctggatca aagaagttat aaagaaggca ggaatgaagc
     1261 tgaaatggag caaattaaaa ctggagagaa taagagaaaa taaggatgct gtgagaaggc
     1321 ctggggcaga tccagcttta ctaaagccaa ggtccccagt tgttactata atgggtcatg
     1381 ttgatcatgg gaaaacgacc ttacttgaca aacttcggga aactcaagtg gcagcgatgg
     1441 aagttggagg cattactcaa catattggtg cttttcttgt ctctctgcct tctggagaaa
     1501 agataacctt tcttgatact ccgggacatg ctgctttctc agcaatgaga gctagaggag
     1561 ctcaggtcac tgacattgtt gtgttggttg tagctgcaga tgatggggta atgaaacaaa
     1621 ctgtggaatc cattcagcac gccaaggatg caggagttcc tattatcctt gcaataaata
     1681 aatgtgacaa gacagatgct gatcctgaaa aggtgaaaaa agagctcctg gcttatgatg
     1741 tggtgtgtga agagtatggt ggtgatgttc aagcagtgca cgtctctgca ctaacaggaa
     1801 agaacctgat ggctttggca gaagcaacaa ttgctctcgc agaaatgttg gaactgaaag
     1861 cagatcccac aggcccagtg gaaggaacag taatagagtc tttcacagac aaaggaagag
     1921 gtcctgttac aacagctata attcaaagag gaactctgaa aaaaggctca attctagttg
     1981 ctgggaagag ttgggcaaaa gttcgactaa tgtttgatga aaatggaaaa acagttaatg
     2041 aggcctatcc tagcatgcca gtgggaatca taggctggag agacctccct tctgcaggag
     2101 atgaaattct tgaagtacag tctgagccaa gggcccgtga agttgttgac tggaggaagt
     2161 ctgagcaaaa agaagaaaag ggcaaagatg acctgaaaat aatggaagaa aagcgaaagg
     2221 aacaccaaga agcacatcgg aaagcccgtg agaagtatgg cagcctgcac tggaagcaga
     2281 gatcatatat aaagtacctt gaaagaaaag aacagagacc cttaaagccc aaagaaaagg
     2341 tagaaaggga ctcaaatgta cttcctataa ttattaaagg tgacgttgat gggtctgtgg
     2401 aggccatctt gaaccttctg gatacctatg atgcttccca tgaatgtgaa ctagaattag
     2461 tgcattttgg attgggtgac atcagtgaaa atgatgttac ctttgctgag acatttgatg
     2521 gtgttattta tggctttaat gtggatgcag gcagtgctat ccagcagtca gctgcacaaa
     2581 agggagtcaa gattaaactt cacaaaatca tctaccatct tattgaagat ttgcaggagg
     2641 aactaagcaa cagattgccc tacaaggtgg aggagtaccc aataggtgag gcttctatac
     2701 tagctacctt cactataaca gaagggaaga aaaaagttcc tgttgctggc tgcagagttc
     2761 aaaagggaca gctagaaaga cagaagaagt ttaaattaat ccgcaacggc caagttattt
     2821 ggaagggctc attaacttcg ctgaaacacc ataaagatga cgttttagtt ataaaaactg
     2881 gtgtggactg tggtcttagt ttagatgaag aaaacgtaga atttaaagtg ggcgatcaag
     2941 ttatctgtta tgaagaaaat aaagtaccaa ctaagacttc ctgggatcca ggattttaaa
     3001 tgtgcattaa aaatggtaaa aatgta
//
