LOCUS       XM_039084809            4822 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus microtubule crosslinking factor 1
            (Mtcl1), transcript variant X11, mRNA.
ACCESSION   XM_039084809
VERSION     XM_039084809.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4822
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4822
                     /gene="Mtcl1"
                     /note="microtubule crosslinking factor 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 10 ESTs, 2 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:316764"
                     /db_xref="RGD:1308319"
     CDS             865..3810
                     /gene="Mtcl1"
                     /codon_start=1
                     /product="microtubule cross-linking factor 1 isoform X11"
                     /protein_id="XP_038940737.1"
                     /db_xref="GeneID:316764"
                     /db_xref="RGD:1308319"
                     /translation="MEEDHLYALRWKELEMHSLALQNTLHKRTWSDEKNMLQQELRSL
                     KQNIFLFYVKLRWLLKHWRQGKQMEEGGEDFAESEHPENVPGLAELGVQGGHRTDGTD
                     QEGTDRGCGLPMGEPAPHSPVQMSEHGSRLPTADGGPLSKQVVENQQLFRALKALLED
                     FRSELREDEHARLRLQQQYASDKAAWDVEWAVLKCRLEQLEEKTEKSLGELDSSAEGK
                     GALKKEREVHQKLLADSHGLVMDLRWQIHHREKNWNREKVELLERLDNERQEWGRQKE
                     ELLWRVEQLQKEKSPRRSGSFLCSPREDDNRPYPHQGSLHPSRPVSMWPCEDTDSIPF
                     EDRPLSKLKESDRCSASENLYLDALSLDDDSEDPPPLRNCLAEEEESRKGNLQRAVSV
                     SCMSEFQRLMDVSPFLPEKGLPSASSREDVTPPLSPDDLKYIEEFNSKDWDYTSPRAG
                     ADRPPDLWADRTEVGRVGHEATAEPCPDSSWYLTTSVTMTTDTMTSPEHCQKQPLRTH
                     VLTEQSGVHVLHSPPAIRRVDSIASGGEGRSRVDPEGPFPMSRARGNLADAKGGHPEP
                     VLNRWPCTPPRHPRDCVEGSLRPLDRPLCPSLGFASPLNSLDMSRNMSDDMKEVAFSV
                     RNAMCSGPAEPQVRDMACQTNGSRTAGTQTIQTISVGLQTEALRASGVTSSPHKCLTP
                     KAGGGTTPVSSPSRSLRSRQVAPAIEKVQAKFERTCCSPKYGSPKLQRKPPSKADQPN
                     SRTSPGMPQKGFSESAWARSTTTRESPVHTTINDGLSSLFNIIDHSPVGVRAGSRSRS
                     AEPRQELGPGQETGTSSRGRSPSPLGVGSEMYREDGGESTPVRQDLSAPPGYTLTENV
                     ARILNKKLLEHALKEERKQATHGSSGLTSDSHPGEAVPAEPGSMENGVWILRPPQYRP
                     AVCHLLNQPFSLESGTALFCARAIPRALLLQARETSKPPPSIPLGPTFPYCLSVSVTR
                     RPSVLGGTR"
ORIGIN      
        1 tttgcctccc tgctcggtct cgttcttcct cctcctcctc gctggcatta ctgctctagg
       61 gctcgcactg cttacggctg cttggtttta agttcagacc tgcattgtat actaaagcct
      121 cggcgtcaac taaatcctct ctctcggttg atttctttcc tttcctttta ttttttttaa
      181 ttttgtttta taagttcctt tttatttcct tgttccttcc cccgttctct tctatcttaa
      241 ttgcaccacg attcgtggtt tagagggcct ttcacgacga ggccacgccc agtggaggca
      301 ctagggaccg atgcagcctt ccgttgctcc tctcttggtg tctcaaccaa ccagccaccc
      361 tgacgaagaa gcgctgagga gtttcagaca aaataccgac tcccatcaca gtcaggacac
      421 ttagactcag taacaagcgc ccgactccct ctggtgatac accagaggga caagtgcagt
      481 tctgagaagt ctcaggcatc ccaggcccac ccagtccctc tggaagataa tccgggatgg
      541 gggagaggag ccagttctga ggaggctggt tttgaaggaa acccccctgc tgccattcgc
      601 tccggccgcc cttcctcgcc gcccagggtg agggccaagg ggagcttcgc cctgggtgca
      661 tggctcagct gctggcccgg actgtggctt tggctgctca acccacaatc caaactgaga
      721 gagcagctgg aatggcagct cggtcaggat cgaggggatg agcgagaggg cctgcgcctc
      781 cgagccactc gggagctgca ccggcacgcg gatggagatt ccgggagcca cgggctggga
      841 ggccagagct gtttcaatct agagatggag gaggaccacc tctacgctct gaggtggaaa
      901 gagctggaga tgcacagcct ggccctgcag aacacccttc acaagcgaac ttggagtgac
      961 gagaagaata tgctgcagca ggagctccgg tccctgaagc agaacatttt cctcttctac
     1021 gtcaagctca ggtggctgct gaaacactgg cgccaaggga agcagatgga ggagggagga
     1081 gaggatttcg cggagagcga acatccagag aatgtgcctg ggcttgctga gcttggagtc
     1141 caggggggcc accggacaga tggaacagac caagagggta ctgaccgagg ctgtggcctt
     1201 cccatgggag agcctgcccc acactccccg gtacagatga gcgaacacgg atcacggctg
     1261 ccgactgcag atgggggacc actcagtaaa caggtggtgg aaaaccagca gctcttcagg
     1321 gccctcaagg ccctgctgga ggacttccgt tcggagcttc gtgaagacga gcatgcgcgt
     1381 ctgcgtctgc agcagcagta cgctagcgac aaggctgcgt gggatgtgga gtgggctgtg
     1441 ctcaagtgcc gcctggaaca gctggaagag aagactgaga aaagcttggg agagctggac
     1501 tcctctgctg agggcaaagg ggccttgaag aaggagagag aggtacacca gaaactgctg
     1561 gctgacagcc acggcctagt catggacctg cgctggcaga tccatcaccg agagaagaac
     1621 tggaaccggg agaaggtgga gctgctggag cgtctggaca acgagcggca ggagtggggg
     1681 aggcagaagg aggagctcct atggcgggtg gagcagttac agaaagagaa aagtccccgg
     1741 agaagcggca gtttcctctg cagcccaaga gaagatgaca accgccctta cccacaccaa
     1801 ggaagcctac acccgtcccg tcctgtgtcc atgtggccct gtgaagacac tgactccatc
     1861 ccttttgaag accggccgct ctccaaactg aaggagtcgg acaggtgctc agccagcgag
     1921 aacctgtact tggacgcttt gtccctggat gatgattcag aggacccgcc acccctcagg
     1981 aactgccttg cggaggaaga agaaagtcgc aaaggaaatc ttcaaagggc agtgtctgtg
     2041 tcctgtatgt ctgagttcca gcgtctgatg gacgtctccc cgttcctgcc tgagaagggc
     2101 ctaccatctg ccagcagcag ggaggatgtc actccaccct tgtcccccga tgacctgaag
     2161 tacatcgaag aattcaacag caaagactgg gactacacat cccccagggc tggggcggat
     2221 cggcctccag acctctgggc agacaggacc gaggtgggtc gggtagggca cgaggccaca
     2281 gcggagcctt gtcccgactc ctcctggtac ctgaccacaa gtgtcaccat gactacagac
     2341 accatgacca gcccagagca ctgccagaag cagccactgc ggacccatgt cctcaccgag
     2401 cagtctgggg tgcatgtgct gcacagcccg cctgccatcc gccgggttga cagtatagca
     2461 tcaggtggtg agggcaggag ccgagtggac cctgagggcc cctttcccat gagcagagca
     2521 agagggaacc tggcagatgc caagggtggt catccagaac ctgtgctcaa caggtggcct
     2581 tgcaccccac ccagacaccc ccgagactgt gtggaggggt ctctccgccc cctcgacaga
     2641 cctctctgcc cctccctggg atttgcctcc cctctgaaca gcctagatat gtctaggaac
     2701 atgagtgatg acatgaagga ggtggccttc tccgtcagga atgccatgtg ctctggtcct
     2761 gccgaacccc aagtcaggga catggcttgc cagaccaatg ggtctaggac agcagggaca
     2821 cagaccatcc agacaatcag tgtgggcctg cagactgagg ccctgcgtgc cagtggtgtc
     2881 accagcagcc cccacaagtg tctcacgcca aaagccggag gtggcaccac acctgtgtct
     2941 tctccttccc gcagccttag gagcagacag gtggcccccg ccattgagaa ggtgcaggcc
     3001 aagtttgaac gcacctgctg ctccccaaag tacggttctc ccaaacttca gagaaagccc
     3061 ccctcaaaag ctgaccagcc aaacagcagg acctcaccag gcatgcccca gaaagggttc
     3121 agtgagtcgg cttgggcccg ctccactacc acgagggaga gccctgtgca caccaccatc
     3181 aatgatggcc tctccagcct tttcaacatc atcgaccaca gtccggtcgg ggtgagggcc
     3241 gggagccgat ctcgatcagc agaacctcga caggagctgg gtccaggcca ggaaacaggc
     3301 accagttccc gaggaaggtc gcccagcccc ctaggggtag gctcagagat gtacagggag
     3361 gatggtggag aaagcacacc agtgagacag gacctatctg caccccctgg ctacacgctc
     3421 actgagaacg tggcccggat cctcaacaaa aagttgttgg agcatgcctt aaaggaggag
     3481 aggaagcaag ccacccatgg ctcctcaggt ctcaccagcg acagccaccc tggagaagca
     3541 gtgccagctg aaccaggatc catggagaac ggcgtgtgga ttctcaggcc acctcagtac
     3601 agaccagcag tttgtcatct tttaaaccaa ccattttcat tggaatcagg aactgccttg
     3661 ttctgcgctc gcgccatccc tagagccctg cttctccagg ccagagagac cagcaaaccg
     3721 ccgccttcca tcccgttggg ccccaccttc ccctactgcc tctcagtctc agtcacccgg
     3781 agacccagtg tccttggagg aacgcggtga ggaggaccca cctgaggaga agccacaccc
     3841 atgacaggaa gcaagcttgc atggatgttc accggaataa ttcactgtaa tttgcataac
     3901 cagactatca ccctcaacca accttcgccc ccaaaagaaa gacgtagctt tctcaaggtc
     3961 aaaggatgtt tttcaaaaac acacggctac tactgaatgt tcaacccggt aaactgagtt
     4021 gtttcgggaa tgaagcagta aacgtgcctg taataatttt ttcatagctc agaaaactat
     4081 ttttgtctcc atctttttta cacacggtat attaaacaaa aagaggtaaa taaggtataa
     4141 acagatttaa gagttttaaa aacaatgtac attttaagag ctctcgagcg cccttgtcct
     4201 cggtcctgcc tgcttgttga taaatctgca ctgttccgct ccggtgggtt ctctgttgtt
     4261 cagagtgttc taagttaaat tttattttgt ccagtcttaa tttttttttt aggagtgttt
     4321 tatttcatgc ttcagactgt ctaactcagc gaactttttg tcgtgaaaag gccaagaggc
     4381 cagaagacaa gagtgtctgt aatctggaaa gatgcaggtt aacgtttggg aaaaggtacg
     4441 gacccttcag atggacttaa gacacctcgt gacccatccg ctcggcctga ccgcacgtcc
     4501 tcgggcactt gtacatacat acattgctct gtccctgccc ttgcctgcgt gtgcgtcggt
     4561 ccagtccact gtaacttgtt ccttgtactg tatgtactgt tgctgtcggt cccttgtacc
     4621 agtgagacga cagcaccatt tttttttaaa ttattgtcaa aacatttaac tgatgttgta
     4681 caaagctcac tcgacatttc cttgtttaag gaaaagcact acaaaaatca cgaggaggcc
     4741 aaactgagac agacgaaggt gcctcagggt ctgcctgaga cctcagtgac acggtaataa
     4801 agtccttaca aggaagcaac aa
//
