LOCUS       XM_039084800            7927 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus microtubule crosslinking factor 1
            (Mtcl1), transcript variant X1, mRNA.
ACCESSION   XM_039084800
VERSION     XM_039084800.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039084800.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7927
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7927
                     /gene="Mtcl1"
                     /note="microtubule crosslinking factor 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 10 ESTs, 2 long SRA reads, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:316764"
                     /db_xref="RGD:1308319"
     CDS             883..6915
                     /gene="Mtcl1"
                     /codon_start=1
                     /product="microtubule cross-linking factor 1 isoform X1"
                     /protein_id="XP_038940728.1"
                     /db_xref="GeneID:316764"
                     /db_xref="RGD:1308319"
                     /translation="METLNGPAGGGAPDPKPQPAGQHHRHHHLHPLAERRRLHRAPSP
                     ARPFLKDLHTRPATATPSAGRAPTPAAPRSPSLTGKAPPSPGSPAAPGRLSRRSGVVP
                     GAKDKPPPGAGARSAGGAKAAPGTRRATRAGPAEPLSRVGRPAGAEPPPALSKGRKAK
                     RGPGTPPARAVVPPAPAARVPAVTLSVTSVAGTRISHTDSSSDLSDCASEPLSDEQRL
                     LPAASSDAESGTGSSDREPLRGAPTPSSGSRGPPPGSPEPPTLLAAPPVAGACLGGRS
                     SPGGTPSGSPGPGSQEDVGGRAPPERTILGTPKEPSLGEQPRLLVVAEEEELLREMEE
                     LRSENDYLKDELDELRAEMEEMRDSYLEEDGYQLQELRRELDRANKNCRILQYRLRKA
                     EQKSLKVAETGQVDGELIRSLEQDLKVAKDVSVRLHHELETVEEKRAKAEDDNETLRQ
                     HMIEVEISRQALQNELERLRESSLKRRGSREIYKEKKLVNQITLPRAVLAWQDDSADL
                     KCQLQFAKEEASLMRKKMAKLGREKDELEQELQKYKSLYGDVDSPLPTGEAGGPPSTR
                     EAELKLRLKLVEEEASILGRKIVELEVENRGLKAEMEDIRVQHEREGTSRDHVPGIPT
                     SPFGDSMESSTELRRHLQFVEEEAELLRRSISEIEDHNRQLTHELSKFKFEPHQESGW
                     LGDGVSKGPGASAPLQEELKSARLQIDELSGKVLKLQCENRLLLSNAQRCDLAAHLGL
                     RAPSPRDSDAESDAGKKESDGEEGRLPQPKREGPVGGESDSEDMFEKTSGFGSGKPSE
                     ASEPCPTELLRVREDTECLVTMKLEAQRLERTVERLISDTDGFIRDSGLRGNGSASPG
                     VQGEGEGSLNEPHLLETINGRMKAFRKELQAFLEQMSRIVDGLSPLSHLTESSSFLST
                     VTSVSRDSPIGTLGKELGPDLQSKLREQLEWQLGQDRGDEREGLRLRATRELHRHADG
                     DSGSHGLGGQSCFNLELRGSPVLPEQSVSVEELQGQLQQAARLHQEETETYTNKIRKM
                     EEDHLYALRWKELEMHSLALQNTLHKRTWSDEKNMLQQELRSLKQNIFLFYVKLRWLL
                     KHWRQGKQMEEGGEDFAESEHPENVPGLAELGVQGGHRTDGTDQEGTDRGCGLPMGEP
                     APHSPVQMSEHGSRLPTADGGPLSKQVVENQQLFRALKALLEDFRSELREDEHARLRL
                     QQQYASDKAAWDVEWAVLKCRLEQLEEKTEKSLGELDSSAEGKGALKKEREVHQKLLA
                     DSHGLVMDLRWQIHHREKNWNREKVELLERLDNERQEWGRQKEELLWRVEQLQKEKSP
                     RRSGSFLCSPREDDNRPYPHQGSLHPSRPVSMWPCEDTDSIPFEDRPLSKLKESDRCS
                     ASENLYLDALSLDDDSEDPPPLRNCLAEEEESRKGNLQRAVSVSCMSEFQRLMDVSPF
                     LPEKGLPSASSREDVTPPLSPDDLKYIEEFNSKDWDYTSPRAGADRPPDLWADRTEVG
                     RVGHEATAEPCPDSSWYLTTSVTMTTDTMTSPEHCQKQPLRTHVLTEQSGVHVLHSPP
                     AIRRVDSIASGGEGRSRVDPEGPFPMSRARGNLADAKGGHPEPVLNRWPCTPPRHPRD
                     CVEGSLRPLDRPLCPSLGFASPLNSLDMSRNMSDDMKEVAFSVRNAMCSGPAEPQVRD
                     MACQTNGSRTAGTQTIQTISVGLQTEALRASGVTSSPHKCLTPKAGGGTTPVSSPSRS
                     LRSRQVAPAIEKVQAKFERTCCSPKYGSPKLQRKPPSKADQPNSRTSPGMPQKGFSES
                     AWARSTTTRESPVHTTINDGLSSLFNIIDHSPVGVRAGSRSRSAEPRQELGPGQETGT
                     SSRGRSPSPLGVGSEMYREDGGESTPVRQDLSAPPGYTLTENVARILNKKLLEHALKE
                     ERKQATHGSSGLTSDSHPGEAVPAEPGSMENGVWILRPPQYRPAVCHLLNQPFSLESG
                     TALFCARAIPRALLLQARETSKPPPSIPLGPTFPYCLSVSVTRRPSVLGGTR"
ORIGIN      
        1 acagcggctc ctccctctcg gagctgccca ggccactggg ggtgccaact gtggagtgct
       61 gtgtcggtct tgacgctgca tccggtacca gagatcctta aagaaactct gggagagcgg
      121 aggggagcga actgaagagg ggaggcagga gtcagataga gggggttggg cggaaccgag
      181 agagaaggct ggcaccccct gcagaggggc cctctacgcg gcctgcacct gcagtgtccc
      241 caagtggctg atgccggctc tcttccctcc ctccacccca gcttcttccc ttcctagccg
      301 gttggggtgg tagccccagt acatccgaag ggagagagtg gtcctcggcc gcgtgggcgc
      361 gtgggcactg cgtccccgga gctgcagccc cgccctcctg ccagccccgc cccctccccg
      421 gcccgctggc aggaggcggg gcgtgagcgc cgagccccgg acggaggggg acgcgcgtgc
      481 agcagcttct ctccgccaga gccgccgggc agaagccgtg gctgccgatc ccggtggact
      541 ggcagtgggc ggggagcgga acgcgggagc ccagcgcgcg ccgccagaca agtgtttttg
      601 tgcgaggccg tggcagccgc ctcagagctc tgaacgctcg gtgcagggga tgcgagcggc
      661 cgcggcggct gtgccaggag gacccgagcg ccattgacct gagcgagggg acacactccc
      721 ttgggtcgtc tgagtgcggg ggaggggacg gcgggagcgc ggggcgcacg ccgggcgggg
      781 cagggggtca gtgatgaccg ggcgcgcggg gaggctgcac gccgccgccg ccgcccggag
      841 catctgctgc ctgagctgcg gatcgcggcc gccgcccggg ccatggagac gctgaacggc
      901 cctgcgggcg gcggcgcccc ggaccccaag ccgcagccag ccggccagca tcaccgccac
      961 caccatctgc acccgctggc cgagaggagg aggctgcacc gcgcaccctc gcccgccaga
     1021 cccttcctca aggatctaca cacgcgaccc gccacggcca ccccctctgc gggccgtgcc
     1081 ccgactcccg ccgctcctcg ctcgcccagc cttaccggga aggcgccgcc gtcgcccggg
     1141 tccccggccg cgccgggtcg cctctcccga cgcagcggcg tagtccccgg cgcgaaggac
     1201 aagccgccgc cgggcgccgg agccaggtcg gcgggtggcg ccaaggccgc cccggggacc
     1261 aggagggcga cgcgcgcggg gcccgcggag ccactgtccc gggtcgggag gccggctggg
     1321 gccgagccgc cgcctgccct ctcgaagggt cgcaaagcca agcgcggccc cgggacgcct
     1381 ccagctcgcg ccgtcgtgcc ccccgctcca gccgcccggg tccccgctgt gaccctctct
     1441 gtgacctcgg tggccggcac ccgtatcagc cacacggaca gcagctcgga tctctccgac
     1501 tgcgcctccg aacccttgtc tgatgagcag cgcctgctcc ccgccgccag cagcgacgcc
     1561 gagtcgggca ccggctccag tgaccgggaa cccctacgcg gagcacccac gccgagctcc
     1621 ggctcccgcg ggccgccgcc gggcagcccc gaacccccta cgctgctcgc ggcgccccct
     1681 gtcgccggtg cctgtctcgg gggccgaagc agcccaggcg ggaccccctc agggtctccg
     1741 ggacccggtt ctcaggagga tgttgggggc cgagcgccac cggagcggac aattctcggg
     1801 acccccaagg agcctagctt gggcgaacag ccccggctct tggtggtggc agaggaggag
     1861 gagctgctga gggagatgga ggaactgcgc tcggagaacg actacctcaa ggacgagctg
     1921 gatgaacttc gagcagagat ggaggaaatg agagacagct acctggagga ggacggttac
     1981 cagctccagg agctgcggag agagctggac cgcgctaaca agaactgcag aatcctgcag
     2041 taccgactca ggaaggctga gcagaaaagc ctgaaagtgg cagaaacagg gcaggtggat
     2101 ggggaactta tccgaagcct ggagcaggac ttgaaggtag ccaaagatgt gtctgtcaga
     2161 ttacaccacg aacttgagac ggtggaggag aagcgagcca aagccgagga cgacaacgaa
     2221 acgctccggc agcacatgat cgaagtggag atatccagac aggccctcca gaacgagctg
     2281 gagaggctgc gggagagttc tctgaagaga agaggcagcc gggaaattta caaagagaag
     2341 aaacttgtta accagataac cctccctcgg gctgttcttg cctggcagga tgacagtgcg
     2401 gatttgaagt gtcagcttca gtttgccaag gaggaagcct ccctgatgcg caaaaagatg
     2461 gccaagctgg ggagggagaa ggacgagttg gagcaggaat tgcaaaagta taagtccctc
     2521 tatggtgatg tggacagtcc cctcccaaca ggagaggctg gcggtccccc cagtaccagg
     2581 gaggcagagc tgaagctgcg gctgaagttg gtggaggagg aagccagcat cctgggccgg
     2641 aagatcgtgg aactggaggt ggaaaaccgc ggcctcaaag cagagatgga agacatacgg
     2701 gttcaacatg agcgagaggg aacaagcagg gaccacgtgc caggcatccc tacctcaccc
     2761 ttcggggact cgatggagtc ctccacagag ctccgccggc acctacagtt tgtggaagaa
     2821 gaggcagagc tgctgaggag atccatatct gagattgaag accacaatcg gcagttgacc
     2881 catgagctga gcaagttcaa gtttgagcct caccaggagt cagggtggct tggggacggt
     2941 gtatccaagg gacctggggc cagtgctccc ctgcaggagg agctgaagtc agccaggcta
     3001 cagatcgatg agctgagcgg gaaggtactg aagctgcagt gcgagaaccg gctgctgctg
     3061 tccaatgccc agcggtgtga ccttgctgcg catctggggt tacgcgcccc gagtcccagg
     3121 gacagcgatg cggagagcga cgcgggcaag aaagagagcg atggggagga gggccgcctt
     3181 ccccagccaa agcgagaagg ccctgttggt ggggagagcg attcggagga tatgtttgag
     3241 aagacctcgg gctttggaag tggaaagcct tcagaggcga gtgagccatg cccgacagaa
     3301 ctgctaagag tccgggagga caccgagtgc ctggtgacca tgaagctcga ggcccagcgg
     3361 cttgagcgga ctgtggagcg cctcatctcg gacaccgatg gcttcatccg tgactcaggc
     3421 ctgcggggca atggatcggc ctcacctggt gtccaagggg aaggtgaggg cagcctgaat
     3481 gaacctcact tgttggagac catcaatggg aggatgaagg ctttcaggaa agagctgcag
     3541 gccttcctgg aacagatgtc ccggattgtg gatggtcttt cgcccttatc ccacctcaca
     3601 gagtcatcca gcttcctctc cactgtgact tctgtgtccc gggactcccc catcgggacc
     3661 ctggggaagg agctgggccc agacttgcag tccaaactga gagagcagct ggaatggcag
     3721 ctcggtcagg atcgagggga tgagcgagag ggcctgcgcc tccgagccac tcgggagctg
     3781 caccggcacg cggatggaga ttccgggagc cacgggctgg gaggccagag ctgtttcaat
     3841 ctagagctca ggggctcccc agttttaccc gagcagagtg tgtcggtaga agagctacag
     3901 ggtcagctcc agcaagcggc cagactgcac caagaggaga cagagacata cacaaacaag
     3961 atccgaaaga tggaggagga ccacctctac gctctgaggt ggaaagagct ggagatgcac
     4021 agcctggccc tgcagaacac ccttcacaag cgaacttgga gtgacgagaa gaatatgctg
     4081 cagcaggagc tccggtccct gaagcagaac attttcctct tctacgtcaa gctcaggtgg
     4141 ctgctgaaac actggcgcca agggaagcag atggaggagg gaggagagga tttcgcggag
     4201 agcgaacatc cagagaatgt gcctgggctt gctgagcttg gagtccaggg gggccaccgg
     4261 acagatggaa cagaccaaga gggtactgac cgaggctgtg gccttcccat gggagagcct
     4321 gccccacact ccccggtaca gatgagcgaa cacggatcac ggctgccgac tgcagatggg
     4381 ggaccactca gtaaacaggt ggtggaaaac cagcagctct tcagggccct caaggccctg
     4441 ctggaggact tccgttcgga gcttcgtgaa gacgagcatg cgcgtctgcg tctgcagcag
     4501 cagtacgcta gcgacaaggc tgcgtgggat gtggagtggg ctgtgctcaa gtgccgcctg
     4561 gaacagctgg aagagaagac tgagaaaagc ttgggagagc tggactcctc tgctgagggc
     4621 aaaggggcct tgaagaagga gagagaggta caccagaaac tgctggctga cagccacggc
     4681 ctagtcatgg acctgcgctg gcagatccat caccgagaga agaactggaa ccgggagaag
     4741 gtggagctgc tggagcgtct ggacaacgag cggcaggagt gggggaggca gaaggaggag
     4801 ctcctatggc gggtggagca gttacagaaa gagaaaagtc cccggagaag cggcagtttc
     4861 ctctgcagcc caagagaaga tgacaaccgc ccttacccac accaaggaag cctacacccg
     4921 tcccgtcctg tgtccatgtg gccctgtgaa gacactgact ccatcccttt tgaagaccgg
     4981 ccgctctcca aactgaagga gtcggacagg tgctcagcca gcgagaacct gtacttggac
     5041 gctttgtccc tggatgatga ttcagaggac ccgccacccc tcaggaactg ccttgcggag
     5101 gaagaagaaa gtcgcaaagg aaatcttcaa agggcagtgt ctgtgtcctg tatgtctgag
     5161 ttccagcgtc tgatggacgt ctccccgttc ctgcctgaga agggcctacc atctgccagc
     5221 agcagggagg atgtcactcc acccttgtcc cccgatgacc tgaagtacat cgaagaattc
     5281 aacagcaaag actgggacta cacatccccc agggctgggg cggatcggcc tccagacctc
     5341 tgggcagaca ggaccgaggt gggtcgggta gggcacgagg ccacagcgga gccttgtccc
     5401 gactcctcct ggtacctgac cacaagtgtc accatgacta cagacaccat gaccagccca
     5461 gagcactgcc agaagcagcc actgcggacc catgtcctca ccgagcagtc tggggtgcat
     5521 gtgctgcaca gcccgcctgc catccgccgg gttgacagta tagcatcagg tggtgagggc
     5581 aggagccgag tggaccctga gggccccttt cccatgagca gagcaagagg gaacctggca
     5641 gatgccaagg gtggtcatcc agaacctgtg ctcaacaggt ggccttgcac cccacccaga
     5701 cacccccgag actgtgtgga ggggtctctc cgccccctcg acagacctct ctgcccctcc
     5761 ctgggatttg cctcccctct gaacagccta gatatgtcta ggaacatgag tgatgacatg
     5821 aaggaggtgg ccttctccgt caggaatgcc atgtgctctg gtcctgccga accccaagtc
     5881 agggacatgg cttgccagac caatgggtct aggacagcag ggacacagac catccagaca
     5941 atcagtgtgg gcctgcagac tgaggccctg cgtgccagtg gtgtcaccag cagcccccac
     6001 aagtgtctca cgccaaaagc cggaggtggc accacacctg tgtcttctcc ttcccgcagc
     6061 cttaggagca gacaggtggc ccccgccatt gagaaggtgc aggccaagtt tgaacgcacc
     6121 tgctgctccc caaagtacgg ttctcccaaa cttcagagaa agcccccctc aaaagctgac
     6181 cagccaaaca gcaggacctc accaggcatg ccccagaaag ggttcagtga gtcggcttgg
     6241 gcccgctcca ctaccacgag ggagagccct gtgcacacca ccatcaatga tggcctctcc
     6301 agccttttca acatcatcga ccacagtccg gtcggggtga gggccgggag ccgatctcga
     6361 tcagcagaac ctcgacagga gctgggtcca ggccaggaaa caggcaccag ttcccgagga
     6421 aggtcgccca gccccctagg ggtaggctca gagatgtaca gggaggatgg tggagaaagc
     6481 acaccagtga gacaggacct atctgcaccc cctggctaca cgctcactga gaacgtggcc
     6541 cggatcctca acaaaaagtt gttggagcat gccttaaagg aggagaggaa gcaagccacc
     6601 catggctcct caggtctcac cagcgacagc caccctggag aagcagtgcc agctgaacca
     6661 ggatccatgg agaacggcgt gtggattctc aggccacctc agtacagacc agcagtttgt
     6721 catcttttaa accaaccatt ttcattggaa tcaggaactg ccttgttctg cgctcgcgcc
     6781 atccctagag ccctgcttct ccaggccaga gagaccagca aaccgccgcc ttccatcccg
     6841 ttgggcccca ccttccccta ctgcctctca gtctcagtca cccggagacc cagtgtcctt
     6901 ggaggaacgc ggtgaggagg acccacctga ggagaagcca cacccatgac aggaagcaag
     6961 cttgcatgga tgttcaccgg aataattcac tgtaatttgc ataaccagac tatcaccctc
     7021 aaccaacctt cgcccccaaa agaaagacgt agctttctca aggtcaaagg atgtttttca
     7081 aaaacacacg gctactactg aatgttcaac ccggtaaact gagttgtttc gggaatgaag
     7141 cagtaaacgt gcctgtaata attttttcat agctcagaaa actatttttg tctccatctt
     7201 ttttacacac ggtatattaa acaaaaagag gtaaataagg tataaacaga tttaagagtt
     7261 ttaaaaacaa tgtacatttt aagagctctc gagcgccctt gtcctcggtc ctgcctgctt
     7321 gttgataaat ctgcactgtt ccgctccggt gggttctctg ttgttcagag tgttctaagt
     7381 taaattttat tttgtccagt cttaattttt tttttaggag tgttttattt catgcttcag
     7441 actgtctaac tcagcgaact ttttgtcgtg aaaaggccaa gaggccagaa gacaagagtg
     7501 tctgtaatct ggaaagatgc aggttaacgt ttgggaaaag gtacggaccc ttcagatgga
     7561 cttaagacac ctcgtgaccc atccgctcgg cctgaccgca cgtcctcggg cacttgtaca
     7621 tacatacatt gctctgtccc tgcccttgcc tgcgtgtgcg tcggtccagt ccactgtaac
     7681 ttgttccttg tactgtatgt actgttgctg tcggtccctt gtaccagtga gacgacagca
     7741 ccattttttt ttaaattatt gtcaaaacat ttaactgatg ttgtacaaag ctcactcgac
     7801 atttccttgt ttaaggaaaa gcactacaaa aatcacgagg aggccaaact gagacagacg
     7861 aaggtgcctc agggtctgcc tgagacctca gtgacacggt aataaagtcc ttacaaggaa
     7921 gcaacaa
//
