LOCUS       XM_039100507             320 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus metallothionein 1F (Mt1f), mRNA.
ACCESSION   XM_039100507
VERSION     XM_039100507.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100507.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 36% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..320
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..320
                     /gene="Mt1f"
                     /note="metallothionein 1F; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 15
                     Proteins, and 64% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:100362769"
                     /db_xref="RGD:2324089"
     CDS             1..309
                     /gene="Mt1f"
                     /codon_start=1
                     /product="metallothionein-1-like"
                     /protein_id="XP_038956435.1"
                     /db_xref="GeneID:100362769"
                     /db_xref="RGD:2324089"
                     /translation="MAYANSLRPFKETVSEAFRPLIGQKDVISSPPALQIHQISEWTP
                     NCSCSTGGSCTCSSSCGCKNCKCTSCKKSCCSCCPVGCSKCAQGCVCKGASGKCTCCA
                     "
ORIGIN      
        1 atggcgtatg ccaacagtct acgccctttt aaagaaactg tttcggaagc cttcagacct
       61 ctgattggtc agaaagatgt catatcatct cccccagctc tccagattca ccagatctca
      121 gaatggaccc caaactgctc ctgctccacc ggcggctcct gcacctgctc cagctcctgt
      181 ggctgcaaga actgcaaatg cacctcctgc aagaagagct gctgctcctg ctgccctgtg
      241 ggctgctcca aatgtgccca gggctgtgtc tgtaaaggtg cctcgggcaa gtgcacgtgc
      301 tgtgcctgaa gtgatgaaca
//
