LOCUS       XM_039093214            1678 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus methionine sulfoxide reductase A
            (Msra), transcript variant X1, mRNA.
ACCESSION   XM_039093214
VERSION     XM_039093214.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039093214.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1678
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1678
                     /gene="Msra"
                     /note="methionine sulfoxide reductase A; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 12 ESTs, 13 long SRA reads, 14 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 46 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:29447"
                     /db_xref="RGD:70979"
     CDS             389..1090
                     /gene="Msra"
                     /codon_start=1
                     /product="mitochondrial peptide methionine sulfoxide
                     reductase isoform X1"
                     /protein_id="XP_038949142.1"
                     /db_xref="GeneID:29447"
                     /db_xref="RGD:70979"
                     /translation="MLSASRRTLQLLSSSIPVRMMGDSSSKVISAEEALPGRTESIPV
                     AAKHHVSGNRTVEPFPEGTQMAVFGMGCFWGAERKFWLLKGVYSTQVGFAGGYTRNPT
                     YKEVCSEKTGHAEVVRVVYRPEHVSFEELLKVFWENHDPTQGMRQGNDCGTQYRSAVY
                     PTSAVQMEAALKSKEEYQKVLSKHGFGPITTDIREGQVFYYAEDYHQQYLSKNPDGYC
                     GLGGTGVSCPTAIKK"
ORIGIN      
        1 tcaggctccc ttcaaacctt gggatggttt caggcaaggc cttgtagaaa taacctgctt
       61 ggcataattt cacagcaaaa gcaagctgaa agtaaactgt tgagacaagt tggcccaggg
      121 gacttctaca ttataaggtc tgcctttctt ctacttcgct gcctttttat gcacacacat
      181 tgatttccct tttctacttg tggttgagtg agtacatcgc acccggaacc ctggatgagg
      241 aggtggggaa acggcaggaa ctctaactcc ccgtggtggc gcccagccag cataaatttt
      301 ggcccgcgcc gcttcacgta ctctgggaac tttgtccctc agagacagcc gggcctggag
      361 gtctgcccgc gagacggaca cgctgtccat gctctccgcc tccagaagga ctctccagct
      421 cctctccagc tccatcccgg tacggatgat gggcgactca tcttcgaagg tcatcagcgc
      481 ggaggaagct ttgccaggac gcacagagtc gatccccgta gcagccaaac accatgtcag
      541 tggcaacaga acggttgaac ctttcccaga gggaacacag atggctgtat ttggaatggg
      601 ctgcttctgg ggagctgagc gcaagttctg gctcttgaaa ggagtgtatt caacccaagt
      661 gggtttcgca ggaggctaca cacgcaatcc cacctacaaa gaggtctgct cagaaaaaac
      721 cggtcacgca gaagtcgtcc gggttgtgta ccggccagag cacgtcagct ttgaggagct
      781 gctcaaggtc ttctgggaga atcacgaccc gacccaaggg atgcgccaag gcaatgactg
      841 tggcacgcag tatcgatcgg cggtctatcc cacctccgcc gtgcagatgg aagctgccct
      901 gaaatccaag gaggagtacc agaaggttct ttcaaagcat ggctttggcc ccatcaccac
      961 cgacatccga gagggacaag tgttctacta cgccgaagat taccaccagc aatacctgag
     1021 caagaaccca gacggctact gtggccttgg gggcactggg gtttcctgtc ccacggccat
     1081 taaaaagtaa tttctctcca cgaagctggc cctggaggtt ccatcaacac catgattgct
     1141 ggatggagca gcactgctgt gattcccatc tgtcacttta tgaagagcac acaccacacg
     1201 ggcatttaca tgaatctggt tgttatccgg gtctgattta cagaaagtag gatgacgagg
     1261 tgatgcgttg taatttgtct tctgatcagt cgggatgggg atagaacatg ttttagtgga
     1321 tcatttgggg tctaaatgaa gataacgaat atcctgtgtc catctgctgg agccggaggg
     1381 atgctaaggg ttctgaaaca gggagctggc tgggagagca cggagcactg ggactctagg
     1441 gctgacatac ctcgcccacc tccctgccct caggtgccta attcattagt gtctaggagc
     1501 tccacgaatc attgccgaaa cactttgctc tgctgcctct agacgcatat taggggtttc
     1561 tctcccccct ccgtcctctc tgtgcagaga aaagacatga gtgaccttaa tgaattctaa
     1621 cattctgctt acagctatga taaagcttgt tctaataaaa atctacggtt tggtgata
//
