LOCUS       XM_039087659            6442 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus musashi RNA-binding protein 2 (Msi2),
            transcript variant X1, mRNA.
ACCESSION   XM_039087659
VERSION     XM_039087659.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6442
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6442
                     /gene="Msi2"
                     /note="musashi RNA-binding protein 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 68
                     ESTs, 3 long SRA reads, 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 64 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:360596"
                     /db_xref="RGD:1560397"
     CDS             126..1190
                     /gene="Msi2"
                     /codon_start=1
                     /product="RNA-binding protein Musashi homolog 2 isoform
                     X1"
                     /protein_id="XP_038943587.1"
                     /db_xref="GeneID:360596"
                     /db_xref="RGD:1560397"
                     /translation="MEANGSPGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKF
                     GEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQ
                     PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFEN
                     EDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLG
                     YPNFVATYGRGYPGFAPSYGYQFPALLPYLNASFPAAAYGPVAAAAVAAARGSVLNSY
                     SAQPNFGAPTSPAGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYISAASPQPGS
                     GFGHGIAGPLIATAFTNGYH"
ORIGIN      
        1 gccgggcggg gggaggaggc gggggaggag ggacggagat ctggggctcg gagccggccg
       61 ccgctgcgct ccgcttcgct gtggggctcg gtgtgtcggg ggtggggggg cgggggggct
      121 ccgctatgga ggcaaatggg agcccaggca cctcgggcag cgccaacgac tcccagcacg
      181 accccggtaa aatgtttatc ggtggactga gctggcagac ctcaccagat agccttagag
      241 actattttag caaatttgga gaaattagag aatgtatggt catgagagat cccacaacga
      301 aacgctccag aggcttcggt ttcgtcacct tcgcagaccc agcaagtgta gataaagtgt
      361 taggtcagcc ccaccatgag ttagattcca agacgattga ccccaaagtt gcatttcctc
      421 gtcgagcgca gcccaagatg gtcacaagaa caaagaagat atttgtagga gggttgtctg
      481 cgaacacagt agtggaagat gtcaagcaat atttcgagca gtttggcaag gtagaggatg
      541 cgatgctgat gttcgacaaa accaccaaca ggcacagagg gtttggcttt gtcacttttg
      601 agaatgaaga cgttgtggag aaagtctgtg agattcattt ccatgaaatc aataataaaa
      661 tggtagaatg taagaaagct cagccgaaag aagtcatgtt cccacctggg acaagaggcc
      721 gggcccgggg gctgccatac accatggacg cgttcatgct tggcatgggg atgttgggct
      781 accccaactt tgtggcaacc tatggcagag gctatcctgg atttgctcct agctatggct
      841 accagttccc agccctatta ccatatttaa atgcaagctt cccagcagcg gcttatggac
      901 cagtggcggc ggcagctgtg gcagcggctc gaggatcagt cctgaatagc tacagtgctc
      961 aaccgaattt tggcgcgccc acttccccgg caggctccaa cccggcgcgg cccggaggct
     1021 tcccgggggc caacagccca ggacctgtcg ccgatctcta cggccctgcc agccaggact
     1081 ccggagtggg gaattacata agtgcagcca gcccacagcc gggctcaggc ttcggccacg
     1141 gcatagctgg acctttgatt gcaacggcct ttacaaatgg ataccactga gcaggtgctt
     1201 ctattaccat ctcactatga gagcatacct ggatgtccag gcaagactgg gcgaagtttc
     1261 tgagtggccc tttgtttagg tgacgtcctc agacctggat cccccaccag cctcactcct
     1321 catcccaacc agaggtggca cacttggatt aagggttgac acatctcatc tcacccatct
     1381 actatctgct gtaatataag acaacagctt ttaaacgtgt atataaccca tgattttggt
     1441 ttggttctgt ttgttttcct tggtggttcc cctccccctc tcccttctcc ttttaaatct
     1501 ccctcgatca catttggtag tgatttttga cttagtctgg tagtcaccta gcttaatatc
     1561 tagttaaaag ctaaccatag tatacttgtt atatattaag gagttttttc tttctttttt
     1621 ttttcttttt tcctttaaga gaatttttgt tttgtttttg attctgttct cacttttaaa
     1681 ggatgctgag atggtgatgt tactctccat ttttggtacc gattttgaga ctgtaagact
     1741 tttcacccgg gactttagca ctgaatcgaa attgtgatac gcggagcggg gggtgggcat
     1801 agactctatt ttgtgttgta gaagtgacat acagttggct gctcaacaga ctctctagca
     1861 gttcattttg tgacgtctct ttgttaacct aagtatatct attttcggca ataaggtaag
     1921 gacggccatg ttttgagggt cctccttttc tatgagtgct ttctcttttt ttctgttcaa
     1981 agaggtcata ttataaggtt ttttgaaatt gtgaattcta aaaaacaaaa aacaaacaaa
     2041 aaaatgttgt aaatatgatt ccattaacta catagaaact attaaggaag agagaatcaa
     2101 aaatattttt gtgagggagt tgctcccagg cagttaggta ccctggaagg aggggaggga
     2161 accttgatga agccggtacc acaacacaag aggacccagc tgccagggca gcccggaacc
     2221 ccactctccg ctgttggtgt ggtagaccta agagctgtgt tagcaccccg ccagcctacc
     2281 agcctctctg tgcccagctt caaatggtat ggtctagcta gatttttatt taaaatatga
     2341 aaaactgctt ttcccaagat gttttttaaa aggaaaacaa aagctacaat tttaatattt
     2401 gacatatttc gagtttcaaa gcacacctgt tttggcttag gggaggggca gggtggggac
     2461 attctttttc agtcttaatt tttaaatatc tgatcatttt atattgtccg atcatttcag
     2521 cacctccaaa gggtcctagg ataaccctgc ctctcccttc accctgctcc ccatcttccc
     2581 cccagagagg gggcctgtgg gccaggtgtg gacaagcctg catgaataca ccctttctcc
     2641 attcattttc tatttacaaa ttaggaaagc aacctttcag tttatatata tttttttttc
     2701 ctttttgata cctcagtgct gcaagtatca tcagagaggc tatggaagag ttttgtgttt
     2761 ttttttaatt tattgtagat gtaaacagaa ttttaaaaaa ataaaatata agcatctctg
     2821 cactgtgact ggtgggaaaa actgacagct tcctgtttgc acaagtttga catttggctg
     2881 ttataatata tggtcctcag ttggggaaag acacttagga tgaaggatgt tttttaattt
     2941 aacttttttt ttttaaagaa aaaatatcag taataagttg gcaacagcaa ccgtaggaag
     3001 gtagcattaa agcatactgt agtgtggata tatatttttt cttttttaaa atgtgatatt
     3061 gacattttat taatattttt taaattgtta cgtttataaa tttggtactt aaggcacagc
     3121 cagtatgaga cactgaatgc gacatttatt acaatgagct gctgcactcc tatttttata
     3181 aactttactg acaagtagac taatgtagac attcacagac acgatagcac agaagcatct
     3241 tcaaacgaaa agtcttcgga aagctgattc agaaaggacg ggaagaagcc tgctcccgtt
     3301 ctggttaaat gcaactttat ttcatttaat tattttattt tttaagaaac aaaatcatgt
     3361 tctttttttt tttttttcta aataaaattg ctgggttgtt tggtaaggtt ttgggtggtt
     3421 tttgttttgt tttgttttaa gtttccaaac aaccaaacta agaaaaatgc tggatgcttt
     3481 taaaatacaa tacttactca agtcataaaa taacaacata gaacttttat ttttaagaaa
     3541 caacaacaaa gagaaagaga gactagattc ccagcaattc agtgtcgaac aaggggatta
     3601 attaattact cttttgtcca tgttgatgat gtcctgtccc cagcccccgc ccatcttccc
     3661 acagccccat tcacctcata gagtgctctt tgttgaccat tgtctgttaa taatgtataa
     3721 aatggctatc ttgtaagtgt gctgtcttgg tactagcgta gtgacttttt ttctcttctt
     3781 ctagtacata ttgataggta taacgtaatt aaggttttta aaaaaaaata gacatagtta
     3841 ttcagattta ggaccagtaa ggatagaact ttctcttatt tatgaaaaga aaaaaaatgc
     3901 taataatttg ggggcagttt tttcctttat ttttttttcc aagttcaaat ttacttttat
     3961 ttttgctgat ttgatgtggt ttcaactaac ccaaggtctc acaatgttca aatgccggct
     4021 gactctacgg cattttgtag gtccctgccc cccgtccgtg aaggggtgtg ccatactacc
     4081 ttaaatgcaa acactagata tgcaaaactg gattttttta atttattttt taaaagaggg
     4141 aggcgtggta tattaaaatg attttactaa gagaaaaaat atttttttaa ggatgctcag
     4201 aagaaattga taatctgtgt gaatatgttt tagatgttta tatacatttt gaagagaccc
     4261 agtagcccat agcacaactt ttgtgaacat ctgatatgtt ttcaagtggc tatctaggtt
     4321 aaggttcatc attagtaccc ccaccccacc gccacctaga agtccatctt aaacaatttt
     4381 tgtaaattct ttcaacactg atgtccatct ttgtcttcgt ttcagttaag ctcagtagcg
     4441 aatgtgggaa ccctcttctc accttctctg ggggagaaac cctcttggct aatggctctt
     4501 ccctggcatt atcaataacc accggggact ctctggcttc cagatccatc tgcctgagac
     4561 cccaaggtcc tctcctccca agaggggaga tggagcagca gttgactcct ggtccccttc
     4621 ctacttcagc ctggatgtgg ggctggtgga ggtgaccgag cctgggtctc caccccagga
     4681 gcctctgcat gtgtggttcg tggccttcct ctcacccact gggaaaacca gacagcctca
     4741 cactctgttc cccatcgctc attggcttga ttcaagtgaa actccaacca gcctttgtgg
     4801 ttttttgttt tttttttaat ccttcataac cattctctta atttgaactt gtagcttggg
     4861 ctttaaggta gcatggcttg attgctgtcg acctaacgtt ccagtgcaca gcgatccacg
     4921 gccactgaat gttacacaca tcttgctaga ctagtataaa atcattgggt aattgttggt
     4981 ttaatgacct gaaaggtgtt cagtttgggg ttttttgggg ggagggaggg gttgtttgtt
     5041 tttctttttt tttttttaat ttgagaattt agggggatat tttttggttc caaatttaaa
     5101 aaaaagtcaa aagctatttt gatttttagt gcaaactagg gctaggaacg tagcctccat
     5161 cacgacaacc acaccgcttc gctctgccat ccacccactg cagcagcatc ttcgagaata
     5221 aagcaatata gtttactaca ttttttttaa ttgaaggtca gccatgcttt tctgtattat
     5281 attgcatatg aaattgttta caaaagaaac actaactcat acttctcttt atcagttgaa
     5341 agtgacacac agggacagag gaaaattgga gggcagggga gggaggggag acaggttttt
     5401 tttgtttgtt tgtctttttg ttttttcttg aatgtgcttt actaaccaga tcctccgagg
     5461 aaggcaaaag ccagacagac agacagacag agagtagaga agcggggcag gctgcaggta
     5521 agcacactgc acaagagaca ctggctggct cccccacctc agctagagca gaagacaaac
     5581 agctcagccc agtcctgggc acagacacta cgcaaggcga cgttggaatt gaagcaatac
     5641 tttaatcctt ttttaagttt gcttcctttt tttttccttt ctttttcttt caccaaaaaa
     5701 aaaaatatag actaaaatac aaaaacaaac agaaaacata taaataaaac ccacccctct
     5761 ctgggaaaca accataattc aaacatggct atttagtaat cagaaggtat tgtctcagac
     5821 aggatttcat ttccgggagg cagggcatga ggggatgagg ggggagggga gcgggactga
     5881 gagacagttc cagagcctcc gtggaaggct tctactgctg tattctgtac atactgtacc
     5941 accctgtgtg gggtctgtga gtgtgctctt gagtagtgtg ggctagccaa tctgccattc
     6001 atggtgttat aaactcggaa ttccatatgt aataggatgc aagtctaagc gtttcatgtg
     6061 gacataaatg tatctaaata aaacttcccc tagcactgtg gctgacctca cccttacttt
     6121 tatactttag tatgaaactg atgagaactt tggtagtgag tatttttttt atatatatat
     6181 acatatatat gtatctatat atatatatat atctcaagca tctttcaggt ctttgtgtgt
     6241 ggctttctta aagccctgtt gtaaaaaaaa aaaaattact atgtggatgg cagtctctca
     6301 catcacagat gtggaaagta taattttata tttgtatttt caaataaata agtttgtgaa
     6361 aggtttccat cctctactgt ggtccagaaa tcaatgtgtt tgtctgacaa aaaaaataat
     6421 aaaataaact gttttgaaca ga
//
