LOCUS       XM_039098491            4764 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus mutS homolog 5 (Msh5), transcript
            variant X1, mRNA.
ACCESSION   XM_039098491
VERSION     XM_039098491.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4764
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4764
                     /gene="Msh5"
                     /note="mutS homolog 5; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 1 EST, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:294252"
                     /db_xref="RGD:1303008"
     CDS             3115..4566
                     /gene="Msh5"
                     /codon_start=1
                     /product="mutS protein homolog 5 isoform X1"
                     /protein_id="XP_038954419.1"
                     /db_xref="GeneID:294252"
                     /db_xref="RGD:1303008"
                     /translation="MAFRATPGRTPPGPGPGVPSASFSSPQPAMAAPGGIEEEDEEEP
                     AEIHLCVLWSSGYLGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAK
                     QDEAMTQFLGKLASQEHREPKRPEIILLPSVDFGPEISKQRLLSGNYSFISESMTATE
                     KILFLSSIIPFDCVLTVRALGGLLKFLSRRRVGVELEDYSVGVPILGFKKFVLTHLVS
                     IDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCRCRWGQKLLRLWFTRPTR
                     ELRELNSRLDVIEFFLMPQNLDMAQMMHRLLSHIKNVPLILKRMKLSHTKVSDWQVLY
                     KTVYSALGLRDACRSLPQSIQLFRDITQEFSDDLHHIASLIGKVVDFEESLAENRFTV
                     LPNIDPEIDAKKRRLMGLPSFLTEVAQKELENLDSCIPSCSVIYIPLIGFLLSIPRLS
                     FMVEASDFEIEGLDFMSSDSLHPVSLRGQAALP"
ORIGIN      
        1 gccctgacca ttcctaagca cagcaccacg tttgtgcctc agtttcctcg cttctttaat
       61 gagaagggtg gccacgttca aacagggaaa cttgacacta gcgaactggc cccctccgtc
      121 ccccacgagg gtgcagaaag ggagtctgag gatgcaaggg ttctgcgttc ttttcacttc
      181 cagtcttgtc ttcgggtttg ctgggaggga ctgtgctctg tatgtgtgga gggggattgg
      241 gaaggagtta gtgaggttag gaatacggat gggtgaaggg cactcgtagg cacaggccgg
      301 gagagaccag gaggcctgat gctggcgaaa caggaagcag agcccaggct ccacggcagg
      361 gggcggtcct ctgaaagcct gtcaacgctt agacttccct agcctgggcc ccttaccctc
      421 ctctcagtgg tgaaggttgc cttggagacc tatcctgata ctaggatagc actggggctc
      481 atcctggggt gggtgggatg gcgactggtt ctgtcacagg aagtaaaaag caaaggtcag
      541 agagattagt gtgagcagag tcaggaaaaa gtaactttcc ccgggaggct cgattttgga
      601 ggttctatcc aactgtagta tagagatata acttgactac ctattttttt cccccacttc
      661 ggtatctttt aattacccat gactttacgt caagcacggg caaataaaaa tacgggacgc
      721 ctcgcggatt tgtgtgacat ccttgcccag gggccctgct gatctctgta acgttcccgt
      781 tttagtgttt gtgttgctga agtgagagct ctattaccac caatttttaa aaatatctaa
      841 aaacaggtct gccaatgtct aacctccaca ctctaagttt ctctactgtc caactacctt
      901 ttttttctac tcagtctaaa atatatatat atgtgtgtgt gtgtgtgtgt atacatgcat
      961 acacacatac tcatatatat gtgtctgtat gcatattata tatgtgtgca tatatatata
     1021 taatttgaag aaaaatatgc tggacttgga acgactgaga aacaaaactg gactgagaac
     1081 tgaaagagac aaggggggct gaggtggagt gatgcatgta atgctggaac agaagttagt
     1141 ggtttcctct cgtgcttcct cttctgagag tgttctcctc cctgggggaa ggcttatctc
     1201 tttcttcccc agaaaggcag aatatacttg gtgtttgggc ttttgaacga catcgcagac
     1261 agctgtagac tgactcatgc gtgagcccca tctaagttct aagtgtgttc ccatttgctg
     1321 acccttgaga tctgtacagg agcctcatcc cgctgataag aaagatggct tcaatgaagc
     1381 cttatttccc tgctgacgtc tcctttgttc cctctggtca gtgaccgtca agcaatctac
     1441 tcatagtgag atctctctgg gagaggcttt agactcaaac aggtttggct gcctctcttg
     1501 tctttatagc cgcagctgct ctgatcatcg gtattgaccg tggcgcctgg attgctagga
     1561 acacacaaac gttctcttgc ctttattttt caggctgctc tctcctggga ccaccagggg
     1621 tactcgtgga tttgaagccc ggactgcatc atcggaattt acactcccat cttatctctg
     1681 aactccctcc tctgctttct cctgctcttc tctcctctgc tggcttctct tcctgcgtcc
     1741 tgggatccct tccggctttt ccttctgggt aaaccagtcc ctaatctctt agcaccccag
     1801 attgaaaggt gtgtccctcc ctgccacacc ccagagctgt caccaataac ctcttccagg
     1861 tttccataac tacattgctc aataatttgc caagggtaac cattaaccca gtccttagcc
     1921 ctgctcccct tgagagagga ttttccagtc actgatcagc agaaccaggt cacctcacac
     1981 catctctgaa cctcaggcag ggtcttattt tagtgtagct aggacagttt ttaaattatg
     2041 tggtgtgtgt gtgtgtgtat gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtacaagc
     2101 agcacaggtg tggaggacaa aggacaatct ggaagtcagt ttttttcctt ctacagagtg
     2161 agtcctggag agaatattga aggtactttt acctgctgag ccagccctga tgaagttatt
     2221 tttgtttgtt ttcttgttat tgtttttttt tgttttgaaa agtatgttgt tgtttttttc
     2281 ctccctcaga aaccccttcc ttctcctttc ccattcaaac ggatcttcag tcagagatac
     2341 cctgtatcct taggggcagg agggctgtag tatggttgca atgtgctcta attaggtcta
     2401 ctcttagaat ttagcatctt tcagatactt atacttcctt ttcaggggtc ccccaaataa
     2461 tcaatccagg tattgctctt gttgggagtg gtcatcccct acaatcagga aacgtaggca
     2521 aagtagggct gaaacaggag ttggttcgta cttccacata tttatttcaa acactcatgc
     2581 agcgcttatt ttgtttgctg ggcactgttc tgagttcttt ataaatatta acttagtggg
     2641 tacaaatatt aaccgagctg tcgctgttgg cacaggttga attaatgttg cttctgccct
     2701 ctctcttcag gaaggaggaa gaacgcctct ggccctttaa gggccgcctt cccgcactgg
     2761 ccctcggcgg cccagaccct ttttcctggc ggggacctta gctctgccct ctgcctttgg
     2821 gcgggctccg cccagcatca atcaaagctc agaggcacgg ctgcttagca aaggcagagg
     2881 gcgggaattt tgaacactct ggcaccgccc ccaatgccaa cggaccagtc agcatttaga
     2941 gccttccccg ccttcccgtt ggatagctaa gcagacccct ccagccaata gcgactaaga
     3001 gggcgggacg agcgagcccg cgcgacccac gcccacaggc tggctggtcc ttcccacagg
     3061 ctcgcggcgg ttggtcaggg aggtggctcg tcgcggctga gagtcgccga gcccatggct
     3121 ttcagagcga ccccaggccg gacgccgccg ggacccggcc ccggggtccc ctcagccagc
     3181 ttctccagcc ctcagcctgc aatggcggcg cctggaggta tcgaggaaga ggacgaggag
     3241 gagccggccg agatccatct gtgtgtgctg tggagctcgg gttatctggg cattgcttac
     3301 tatgacacta gtgactccac gatccacttc atgccagatg ccccagacca cgagagcctg
     3361 aagcttctcc agagagttct ggatgaaatc aacccccagt ctgttgtgac aagcgccaaa
     3421 caggatgagg ctatgactca atttctaggg aagcttgcct cccaggagca cagagagcca
     3481 aagagaccag aaatcatcct tctgccaagc gtggattttg gtccagagat aagcaaacag
     3541 cgcctccttt ccggaaacta ctccttcatc tccgagtcca tgaccgccac tgagaaaatc
     3601 ctcttcctct cctccattat tccctttgac tgtgtcctca cggtccgggc acttggaggg
     3661 ctgctcaagt tcctgagtcg aagaagagtt ggggttgaac tggaggacta cagtgttggc
     3721 gtccctatcc tgggatttaa gaagtttgta ttgacccatc tggtgagcat agatcaagac
     3781 acttacagcg ttctacagat tttcaagagt gagtctcacc cctcagtgta caaagtagcc
     3841 agcgggctga aggaggggct cagcctcttt ggaatcctca acagatgtcg ctgtaggtgg
     3901 ggacagaagc tgctcaggct atggtttaca cgtccgaccc gggagctacg ggagctcaat
     3961 tcccgtctgg atgtcattga gtttttcctg atgcctcaga acctggacat ggcccagatg
     4021 atgcaccgtc tcctgagcca catcaagaac gtgcctctga ttctgaaacg catgaagttg
     4081 tcccatacca aggtcagtga ctggcaggtg ctctacaaga ctgtgtacag cgccctcggc
     4141 ctgagggatg cctgccgttc cctgccccag tccatccagc tttttcggga cattacccag
     4201 gagttctctg acgacctgca ccacattgcc agcctcatcg ggaaggtggt ggacttcgag
     4261 gaaagtcttg ctgaaaatcg cttcacagtc ctccccaaca tagatcctga aatagacgct
     4321 aaaaagagaa ggctgatggg gcttccgagt ttcctcacgg aagttgctca gaaggagctg
     4381 gagaacctgg actcttgcat cccctcatgc agtgtcatct acatccctct gatcggcttc
     4441 ctcctttcca ttccccgatt gtctttcatg gtggaggcca gtgactttga gattgaggga
     4501 ctggacttca tgagctcgga ctccttgcac ccagtttctc tcagaggaca agctgcacta
     4561 ccgtagtgcc cggaccaagg agctggacgc actgctggga gacctgcact gcgagatccg
     4621 ggaccaggag atgctgctga tgcaccagct gcagtgccag gtgctggcac gggctccggt
     4681 cttgactcgg gtactggacc ttgcctcccg cctggacgtc ctgttggctc ttgccagtgc
     4741 cgcccgggac tacggctatt cgag
//
