LOCUS       XM_039109741            1589 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus musculin (Msc), transcript variant X1,
            mRNA.
ACCESSION   XM_039109741
VERSION     XM_039109741.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039109741.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1589
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1589
                     /gene="Msc"
                     /note="musculin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 EST, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:312897"
                     /db_xref="RGD:1305496"
     CDS             402..1064
                     /gene="Msc"
                     /codon_start=1
                     /product="musculin isoform X1"
                     /protein_id="XP_038965669.1"
                     /db_xref="GeneID:312897"
                     /db_xref="RGD:1305496"
                     /translation="MSTGSVSDPEDTEMRGLQRVYPAPASKRPPLLRPERSYASPSDN
                     SSAEEEDPDGEEEPGTVGAAGGCKRKRPRGADASGAGGGAGSTGKKALPPKGSAAECK
                     QSQRNAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLL
                     QEDRYEDSYVHPVNLVGMLRVRPGDRRFLEPVTWPFVVSGRPDSDTKDVSAANRLCGT
                     SA"
ORIGIN      
        1 cacctcaata tcctctaatg ataagtcact aagggactta ctcatcccct ttttataccc
       61 agtttggaaa gtaagaatta aagaagtgct cctgtttcgt agtgaggaaa agaactggag
      121 tatctatctg cttgacccac tctcatctgc aaccggtgag ccaagagacc aagcagctga
      181 acaggaaaga aactggcttc ctcctgcgaa gccttgcata agcaaataca cctcatgagc
      241 gatgaacttg aacaacaggc ccaaactggg agtcaagcag cagtggacat gccgggattc
      301 ttaagtgccc actaagacgg ctgcagagag aagaagccgg agagggcgag actggccggg
      361 gcggagaaag gcgggcgcgc gtgggcgcca gggaataggc gatgtccacc ggctcggtga
      421 gtgaccccga agacacggag atgcgggggc tgcagcgggt ctacccggcc cccgcctcca
      481 agaggccacc cctgctccgc ccggagcgca gttacgcctc gcccagcgac aactcttcgg
      541 cggaggagga ggaccccgac ggcgaagagg agccgggcac cgtgggagcc gcgggaggct
      601 gcaagagaaa gcggccccgt ggggctgacg ccagcggcgc aggtggcggt gcgggcagca
      661 ccgggaagaa ggcgctcccg cccaagggct cggccgccga gtgcaagcag tcacagcgga
      721 acgcggccaa cgcccgcgaa cgcgcccgga tgcgcgtgct gagcaaagct ttctccagac
      781 tcaagaccag cctgccttgg gtgccgccgg acaccaagct ttccaaactg gacacgctgc
      841 gtttggcttc cagctacatc gcgcacctgc gccagctgct gcaggaggac cgctacgagg
      901 atagctatgt gcaccccgtg aacctggtag ggatgctgcg cgtgaggccc ggggacagga
      961 ggtttctgga accggtgacg tggccattcg tggtctctgg acgcccagac tctgatacca
     1021 aagatgtttc tgcagccaac aggctttgtg gaacttcagc ttagatggac agcaacactg
     1081 ctggatggat tgtgttaaat gcaaaggact gggccaagga agtcccatcg attccggacc
     1141 ttctcctttc cctgtgtttg tgaacaagac aggtgacaag tgtggttgcc ctcctggaac
     1201 acaggtggcc atggctactt gaatcagttc aaaaacctgt agccaaagag agcccagttt
     1261 tggggaaagg ggatatctgg ggattcagct ccttcccacc cacactgtcc ctgaagtctt
     1321 ttcttactgc ctatttgggg atacacactt cacccctgta atcaggtcac catgccacag
     1381 cacagcttct gtttttccag ggttgcactg ttcttcctgg tccaaggact gcacatgatg
     1441 ggcagctggg gctggggctg gggctggggc tggagctggt ctctattata ctggtttcta
     1501 cccagtgcat ggtgcttagt ggtcctggca atgctgcagt accatggtaa ctaacatatg
     1561 taaataaatt tattttttta tgaacaaaa
//
