LOCUS       XM_056984513            2630 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Myb/SANT DNA binding domain containing
            2 (Msantd2), transcript variant X1, mRNA.
ACCESSION   XM_056984513
VERSION     XM_056984513.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 9, 2024 this sequence was replaced by
            NM_001427012.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2630
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2630
                     /gene="Msantd2"
                     /note="Myb/SANT DNA binding domain containing 2; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 26 ESTs, 7 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     143 samples with support for all annotated introns"
                     /db_xref="GeneID:500974"
                     /db_xref="RGD:1562840"
     CDS             53..1981
                     /gene="Msantd2"
                     /codon_start=1
                     /product="myb/SANT-like DNA-binding domain-containing
                     protein 2 isoform X1"
                     /protein_id="XP_056840493.1"
                     /db_xref="GeneID:500974"
                     /db_xref="RGD:1562840"
                     /translation="MPPPFSARSSGAPGPSSSPPEGSGQSQHAGGERQKFAGRLSQPD
                     TSTEPSACCEPLSPEPGPRVAPETVVAGCGGASLPGGAAAAAWKMAAPCGSELPANSP
                     LKIPKMEVLSPASPGDLSDGNPSLSDPSTPRGASPLGPGSAAGSGAAASGGLGLGLGG
                     RSAASSSVSFSPGGGSGGAAAAAAAACRGMSWTPAETNALIAVWGNERLVEARYQQLE
                     GAGTVFGSKAPGPAMYERVSRALAELGYERTPSQCRERIKTLRRCYSRVKEHGVGKRK
                     SSYTFEQLEQVFGQGGWDAQPCQPVLINSSGLYQELESDGSTMEDYSQEDWGNHSQDL
                     HGYPTDQELDDMPVSKRTLKIKQESSEEAQKRDTMQNIVQILESVQLKWELFQSWTDF
                     SRLHLSNKLAIFGIGYNTRWKEDIRYHYAEISSQVPLGKRLREYFNSEKPEGRIIMTR
                     VQKMNWKNVYYKFLEITISEARCLELHMEIDWIPIAHSKPTGGNVVQYLLPGGIPKSP
                     GLYAIGYEECIERPLSPDVDPGKEGRADLETLSAQASLQVEVEPARIVYCYLGIAEVR
                     TLQQCLFLHFQANTKTFSKDWAGINGFLSQNCIVDPGVSPKSIYIKFVEVERDFLSAG
                     SLVECLEKAIGYPLKFNN"
ORIGIN      
        1 gattggagag gaagtgggaa ggctccaatc agtccctcac tcccgcgccc tcatgccccc
       61 acccttctca gctcggagct ccggtgcgcc gggtcccagc tcctcgcctc cggaggggag
      121 cggccagagc caacatgctg gaggggaaag gcaaaaattt gcgggccgct tgagccagcc
      181 agacacatcc accgagccct cagcttgctg cgagccactc agccccgagc caggccctag
      241 ggtagccccg gagaccgtgg tggccggatg cgggggtgcg tcacttccgg gcggtgcagc
      301 ggcggcggct tggaagatgg ctgcgccctg tggctcggag ctgcccgcca actcgccgct
      361 aaaaattccg aagatggagg tgctttcccc ggcttctcct ggcgatctga gcgacgggaa
      421 cccatcactg tccgaccctt ccacgcctcg gggagcctca cctctcgggc cgggcagcgc
      481 ggcgggctcg ggggccgcgg cgtccggggg tcttgggctg gggctggggg gccgcagcgc
      541 tgcctcgtcc tcggtctcct tctcgcccgg cggcggcagt ggcggggctg cggcggccgc
      601 tgccgccgcc tgccggggca tgtcgtggac gccggcagag acgaacgcgc tcatcgctgt
      661 gtggggcaac gagcggctgg tggaggcgcg gtaccagcag ctggagggag ccggcacggt
      721 attcggcagc aaggcccctg ggccggccat gtacgagcgc gtgtcccggg ccctggccga
      781 gctgggctac gagcggaccc cgtcccaatg ccgggagcgc atcaagaccc ttcgcaggtg
      841 ttacagtcgg gtgaaagaac atggtgttgg gaaaagaaag agcagttaca catttgaaca
      901 gttggaacag gtgtttggtc agggaggatg ggatgctcag ccctgccagc ctgtacttat
      961 taacagtagt ggcttgtacc aggagctgga gtcagatggc agcactatgg aggactattc
     1021 acaggaggac tggggaaacc acagtcagga tctccatggc tatccaacag atcaggaatt
     1081 ggatgatatg ccagtttcaa agagaacgtt aaaaataaaa caagagtctt ctgaagaggc
     1141 acagaagcga gacaccatgc agaatattgt acagattttg gagtcggtgc agttgaaatg
     1201 ggaactgttt cagagctgga cagacttttc aaggctccat ctttctaaca aattggccat
     1261 ttttggaatt ggctataaca cccgctggaa agaggatatc cgttaccatt atgctgagat
     1321 cagctcacag gtgccccttg gcaagcgtct tcgggagtac ttcaactctg agaagcctga
     1381 gggacggatc attatgaccc gggtgcaaaa aatgaactgg aaaaatgttt actacaaatt
     1441 tttagagatc accatcagtg aagcgaggtg cctagagctg cacatggaga ttgactggat
     1501 acccatcgcc cactccaagc cgaccggggg caacgttgtt cagtatttac tgccaggagg
     1561 gattcctaaa agcccaggcc tttatgccat tggctatgaa gaatgtatcg agaggccgct
     1621 ctcaccagat gtggacccag ggaaggaggg ccgtgctgac ctggaaaccc tctccgcaca
     1681 agcctcgtta caggtggaag tggagcccgc ccggatcgtc tactgctacc tcggcattgc
     1741 tgaagtcagg actctgcagc agtgcttgtt cttacacttc caagcaaata ccaaaacctt
     1801 cagtaaggat tgggctggca ttaatgggtt tttgtctcag aactgtattg tggatcctgg
     1861 agtttcccct aaatccatct atatcaaatt tgtagaagta gagagggatt ttctttctgc
     1921 cggctcatta gtcgagtgtc tggaaaaagc cattggttac cccttaaaat ttaacaactg
     1981 agtgtcatcc ttcataagga tttgggcttg tgcattcttg tcccttcttc cccttaccca
     2041 gactacccca cacacatcca gatgctgccg ttggactctt cctgggagct ctttccacga
     2101 tgagaccagt acaacctcta agaaatcata gtagcctctg ggcagaaaaa gcagacctca
     2161 cctgaaatgc tcattttgag caagcaggtc ttgcatggtg ggtcagttct tttttacaaa
     2221 aagaaaacat cgatttttga aagcgctttt agagccttgg tgtaaacaaa tgtaggtaca
     2281 ttccatattg gacaaaactt atactttgag tttcatatga aattgaaaat tgtatttttt
     2341 tcactatgtt tcatttttac acatctctat aagtattatt tacaaccttg aataaataag
     2401 caatagataa tggcaagtaa atggagtcac agtgaataaa actgtttttt gaagattccc
     2461 tttagctact attgtatata atttagagtt cattttttca ccaaccaagt gttttactat
     2521 ttccaatcag tgttgcctgc aaagactttt gtttatgtga tgtaccaact tttatggttg
     2581 tgttgccatt taaacttaaa aaaaaaaaaa ttaaaggaat tcctaacttc
//
