LOCUS       XM_039101347            2143 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus membrane-spanning 4-domains, subfamily
            A, member 6C (Ms4a6c), transcript variant X1, mRNA.
ACCESSION   XM_039101347
VERSION     XM_039101347.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101347.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2143
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2143
                     /gene="Ms4a6c"
                     /note="membrane-spanning 4-domains, subfamily A, member
                     6C; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, 4 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     15 samples with support for all annotated introns"
                     /db_xref="GeneID:690930"
                     /db_xref="RGD:1589849"
     CDS             723..1448
                     /gene="Ms4a6c"
                     /codon_start=1
                     /product="membrane-spanning 4-domains subfamily A member
                     6C-like isoform X1"
                     /protein_id="XP_038957275.1"
                     /db_xref="GeneID:690930"
                     /db_xref="RGD:1589849"
                     /translation="MVEVIEERQRASSSPGNSIMIPQVVTNETITLISPNGTNFPQTD
                     KLQPTVKRQVSLKKHLKAEIKVMAAIQIMSAVMVLGLGIILASVPPVLHFTSVFSVLL
                     KSGYPFIGPLFFIISGILSIITERKSTNPLVDGSLTLNILSVSFAFMGIIIISVSLAG
                     LHPASEQCKLSKDPRPTEHHYYHISYDSDRNECSVTNSVLAGALTVMLINTLLELVLA
                     GLSVMLWSKEGALTSLRSSRCGH"
ORIGIN      
        1 gaactaaatg ggcaaaggga cagggcatct gacttacctc tgtcctggct gtttctagct
       61 gcatgatctt cgtgatcact gacataagga gcagagctct caagtcattc actgattggg
      121 aagcataaag gctgagaata gaacaaagaa cagaagggag ccaagccgag ctcaggaacc
      181 cattccccag ggaacatggt ccttccatat ttagaaacat gagtgccaag atcctgagaa
      241 aacttgaacc acagcttagg aatccaggac ttctcacact gctgtattca gctgcttctc
      301 cacactgaaa agacttagac aaaggctgct gctggcaggt gggaaaatat ggagaacaac
      361 cagagtcaga gacagctggg gtcccacacc caaatgtgtg taaccaatgg ggcaataatg
      421 agaactttgt ctatttaaca tttattcgat gttgctgtac aatgcatgaa ttacttcccc
      481 gtgcacatct aaatttgatt ctgaatttgt tactgattat gatttgatta gttaacataa
      541 aagatttgtt tgaggaataa aaacagtaga ttatgtctac taaaataaga taaaatgtga
      601 aaattggcac tattaggcaa acaaagcaga caaatggggt tacatatttt gagtggtatg
      661 tagcatggat tggaacgtac tgaagctgat ttgcagcacc tcgtgggtag cacagtaact
      721 ggatggtgga agtcattgaa gaaagacaac gcgcttcttc tagcccaggg aactccatca
      781 tgattccaca agtagtgact aatgagacca tcacactgat ttcaccaaat ggaaccaact
      841 ttccccaaac agacaaactc cagcctaccg tgaagaggca agtcagcctg aagaaacatc
      901 taaaggcaga gatcaaagtg atggcggcaa tccagatcat gagtgctgtg atggtgttgg
      961 gtctgggaat cattttggca tctgttcctc ctgtcctaca ttttacctca gtgttttctg
     1021 tcctgttaaa atctggatac ccatttatag gacctttgtt ttttattatc tctggaattt
     1081 tgtccatcat tacagagaga aagtcaacaa atcctttggt agatggcagc ctgactctga
     1141 acatcctgag tgtttcattt gctttcatgg gcatcattat catctctgtc agcctggctg
     1201 gtttgcatcc tgcctcagag cagtgcaagc tgagcaagga ccctagacca actgaacatc
     1261 attactacca catttcctat gactctgaca ggaatgagtg ctctgtcacc aactctgttc
     1321 tggctggagc ccttacagtg atgctgatca acaccctgtt ggagcttgtt ctggctgggc
     1381 tctccgtaat gctgtggtca aaagaaggtg ctttgacttc cctcagatcc tccagatgcg
     1441 gtcattaatc ctgaatacga gggaacagac agaaaagcca tccaagaact tctggtggta
     1501 ttcttgtggt ttcctgctgt ttccttggac caattggacg agcctcatgg tttcttcttg
     1561 actgaactgc tgttgctgac tcctgaatgg tattcgtgag tggattgagc tatctctgct
     1621 gattcgtgtg aacccaactg ctgctgatat tctaacaatg aagattggaa tcacccccaa
     1681 agaactattt ctaaacaggt ccacatcctc ctttgcccta ttaaccttcc ctttcctctg
     1741 tcagctacca actggctatg tgctcctgtc tatagcacat gcctggctac acatttattt
     1801 tggcttcctg aagtagtgct atgtagtata aaataaggtt agggggtaac tgacccacca
     1861 ggagtgcaga aggaggatgg gaaagtatta tttttttaat ttaaatgagg gtttttttaa
     1921 tgctgatgtt atgagttctt ttaataaaat attcagttat attaaaactc agggaggcag
     1981 gattgtgatt gtacaaataa agatgcctga gctacttggg ccattttctt gaaaatcaac
     2041 aggtggtttc actttggtca atgcctcttc cgagtctcag tacctgcgcc ttgtagctgg
     2101 agctggtctc cagcaagaaa gaattagaga ctgggaggta agc
//
