LOCUS       NM_001006975            1404 bp    mRNA    linear   ROD 24-MAY-2023
DEFINITION  Rattus norvegicus membrane-spanning 4-domains, subfamily A, member
            6B-like 1 (Ms4a6bl1), mRNA.
ACCESSION   NM_001006975 XM_215157
VERSION     NM_001006975.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1404)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1404)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC083691.1.
            
            On Nov 22, 2004 this sequence version replaced XM_215157.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083691.1, FQ230476.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5756307, SAMEA5760383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1404
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..1404
                     /gene="Ms4a6bl1"
                     /gene_synonym="Ms4a6b; Ms4a6bl; Ms4a6e"
                     /note="membrane-spanning 4-domains, subfamily A, member
                     6B-like 1"
                     /db_xref="GeneID:293749"
                     /db_xref="RGD:1359381"
     exon            1..101
                     /gene="Ms4a6bl1"
                     /gene_synonym="Ms4a6b; Ms4a6bl; Ms4a6e"
                     /inference="alignment:Splign:2.1.0"
     exon            102..264
                     /gene="Ms4a6bl1"
                     /gene_synonym="Ms4a6b; Ms4a6bl; Ms4a6e"
                     /inference="alignment:Splign:2.1.0"
     CDS             118..861
                     /gene="Ms4a6bl1"
                     /gene_synonym="Ms4a6b; Ms4a6bl; Ms4a6e"
                     /note="membrane-spanning 4-domains, subfamily A, member
                     6B; membrane spanning 4-domains A6E; membrane-spanning
                     4-domains, subfamily A, member 6E"
                     /codon_start=1
                     /product="membrane-spanning 4-domains, subfamily A, member
                     6B-like 1"
                     /protein_id="NP_001006976.1"
                     /db_xref="GeneID:293749"
                     /db_xref="RGD:1359381"
                     /translation="MIPQEVTSETITVISPKSINFPQTDESQSTYHWQDSLKKLLKAE
                     IKAMAAIQIMCAVMVLGLGIILASVPSVPHFTSVFSVLLKSGYPFVGALFFIVSGILS
                     IITETKSTKSLVDGSLTLNILSVSFAFMGIIIISVSLAGLHPASEQCKLSKDPRPTEY
                     HYYHNSYDSDRNECFVAKSILMGVFSLMLITSMLELGLAVLSALLWWKQSRSDFPGNV
                     IFLSHNSNDESNVESKALCNSAYEEQMVC"
     exon            265..399
                     /gene="Ms4a6bl1"
                     /gene_synonym="Ms4a6b; Ms4a6bl; Ms4a6e"
                     /inference="alignment:Splign:2.1.0"
     exon            400..456
                     /gene="Ms4a6bl1"
                     /gene_synonym="Ms4a6b; Ms4a6bl; Ms4a6e"
                     /inference="alignment:Splign:2.1.0"
     exon            457..663
                     /gene="Ms4a6bl1"
                     /gene_synonym="Ms4a6b; Ms4a6bl; Ms4a6e"
                     /inference="alignment:Splign:2.1.0"
     exon            664..765
                     /gene="Ms4a6bl1"
                     /gene_synonym="Ms4a6b; Ms4a6bl; Ms4a6e"
                     /inference="alignment:Splign:2.1.0"
     exon            766..1353
                     /gene="Ms4a6bl1"
                     /gene_synonym="Ms4a6b; Ms4a6bl; Ms4a6e"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaagtcacga aagatcagac tgagagaagc cagagttaag gctcttagga ttcctgggag
       61 ctcacctgga agtgactggg tgacaaggca cacaggctca gctaagagag ctccatcatg
      121 attccacaag aagtgaccag tgagaccatc acagtgattt caccaaagag tatcaacttt
      181 ccccaaacag acgaatccca gtctacctac cattggcagg acagcctgaa aaaacttcta
      241 aaggcagaga tcaaagcaat ggcggcaatc cagatcatgt gtgctgtgat ggtgttgggt
      301 ctgggaatca ttctggcatc agttccctct gtgccacatt ttacctcagt gttttctgtc
      361 ctgttaaaat ctggataccc atttgtagga gctttgtttt ttattgtttc tggaattctg
      421 tccatcatca cggagacaaa gtcaacaaaa tctttggtag atggcagcct gactctgaac
      481 atcctgagtg tttcatttgc tttcatgggc atcattatca tctctgtcag cctggctggt
      541 ttgcatcctg cctcagagca gtgcaagctg agcaaggacc ctagaccaac tgaatatcat
      601 tactaccaca attcctatga ctcagacagg aatgagtgct ttgttgccaa gtctatcctg
      661 atgggggtct tttcactgat gctgatcacg agtatgttgg agcttggcct ggcagtcctc
      721 agtgctctgc tttggtggaa acagagtcgc tctgacttcc ctgggaatgt gattttcctg
      781 tctcataact caaatgatga atccaatgtg gaatcaaagg cactctgtaa ctctgcatat
      841 gaggaacaaa tggtttgtta agaaaaacaa aacagaacaa aattccccaa aacaagtggg
      901 aactaaacag cagagggtat gtcttcttga taatgcagaa aatacaatca tcacaaggta
      961 gcaatgcttg ttactaaaaa tgtagactgt ttatacaatg aataccagta tgagttgaat
     1021 ggatgtgtta atgtcatcct attgattttc atgaccttgg cttcatccac agctcagacc
     1081 tgcaaacagt ggccagagtc ccagatattt ctcattaaga taacagaatg tttcaggaga
     1141 ttgtgatgga gcaaaggggc aacactttct tgtaccctgc aattaatatc aacagttacc
     1201 cattaacagt ccttgttttc agaatccctg ttatggcatg ggtctttcat catatcaatt
     1261 ttattcacta gtgcatagag acaagtgacc tgcaatgaat tcccaagaag tatatatgct
     1321 gttgcttcaa aataaagtgt ttttgtgatt atcaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1381 aaaaaaaaaa aaaaaaaaaa aaaa
//
