LOCUS       NM_001408758            2462 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus membrane spanning 4-domains A6A (Ms4a6a), mRNA.
ACCESSION   NM_001408758 XM_342028
VERSION     NM_001408758.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2462)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Jun 23, 2022 this sequence version replaced XM_342028.8.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.568620.1,
                                           SRR26360172.1233715.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-104               JAXUCZ010000001.1  217839470-217839573 c
            105-267             JAXUCZ010000001.1  217837930-217838092 c
            268-402             JAXUCZ010000001.1  217836627-217836761 c
            403-459             JAXUCZ010000001.1  217833541-217833597 c
            460-672             JAXUCZ010000001.1  217830679-217830891 c
            673-774             JAXUCZ010000001.1  217828660-217828761 c
            775-2462            JAXUCZ010000001.1  217826261-217827948 c
FEATURES             Location/Qualifiers
     source          1..2462
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..2462
                     /gene="Ms4a6a"
                     /gene_synonym="Ms4a11"
                     /note="membrane spanning 4-domains A6A"
                     /db_xref="GeneID:361735"
                     /db_xref="RGD:1305800"
     exon            1..104
                     /gene="Ms4a6a"
                     /gene_synonym="Ms4a11"
                     /inference="alignment:Splign:2.1.0"
     exon            105..267
                     /gene="Ms4a6a"
                     /gene_synonym="Ms4a11"
                     /inference="alignment:Splign:2.1.0"
     CDS             121..858
                     /gene="Ms4a6a"
                     /gene_synonym="Ms4a11"
                     /note="membrane-spanning 4-domains, subfamily A, member
                     11; membrane-spanning 4-domains, subfamily A, member 6A"
                     /codon_start=1
                     /product="membrane-spanning 4-domains subfamily A member
                     6D"
                     /protein_id="NP_001395687.1"
                     /db_xref="GeneID:361735"
                     /db_xref="RGD:1305800"
                     /translation="MIPQVVINDTVTVTSPNGISFPQTDKPQPPHQRQDSLKKHLKAE
                     IKVMAAIQIMCSVMVLALGIILASVPSVPHFTSVFSVLLKSGYPFMGALFFAISGILS
                     VITEKKMTKPLVQCSLALSILSILSALIGLVILSVSLTALEPALQQCKLIATQQPVTT
                     PHYYRFFHHELADKNCFTAKAALTGVFSLMLISSVLELGLAVLTTILWWKQSFSDFSG
                     NVIFLSQDSKNKSSISSESLCNPAYEK"
     exon            268..402
                     /gene="Ms4a6a"
                     /gene_synonym="Ms4a11"
                     /inference="alignment:Splign:2.1.0"
     exon            403..459
                     /gene="Ms4a6a"
                     /gene_synonym="Ms4a11"
                     /inference="alignment:Splign:2.1.0"
     exon            460..672
                     /gene="Ms4a6a"
                     /gene_synonym="Ms4a11"
                     /inference="alignment:Splign:2.1.0"
     exon            673..774
                     /gene="Ms4a6a"
                     /gene_synonym="Ms4a11"
                     /inference="alignment:Splign:2.1.0"
     exon            775..2462
                     /gene="Ms4a6a"
                     /gene_synonym="Ms4a11"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcaagtagga accaaagttc agactgagaa aatcgaggtt aaagcttctg ggatttctga
       61 gcgctcagct ggaagtgact gagtaataag gcggacaggc tcagctgtgg gaactccatc
      121 atgatcccac aagtagtgat caatgatacc gtcacagtga cttcaccaaa tggaatcagc
      181 tttcctcaaa cagacaaacc ccagcctccc caccaaaggc aagacagtct gaagaaacat
      241 ctgaaggcag agatcaaagt gatggcggca atccagatca tgtgttctgt gatggtgttg
      301 gctctgggaa tcattttggc atctgttccc tctgttccac attttacttc agtgttttct
      361 gtcctgttaa aatctggata cccatttatg ggggcattgt tttttgccat ctctggaatt
      421 ctgtctgtta tcacagagaa aaagatgact aagcctttgg ttcagtgcag cctagctctg
      481 agcatcctga gtatcctctc tgctctcata ggccttgtta tactctctgt cagtctgact
      541 gctttagagc ctgccttgca gcagtgtaag ctgattgcca cacaacaacc agtcacaacc
      601 ccacattatt atcgtttctt tcaccatgaa ctggctgaca agaactgctt cacggccaaa
      661 gctgctctga ctggagtctt ttcattgatg ctgatcagca gtgtgttgga gcttggcctg
      721 gctgtcctca ctaccatact gtggtggaag cagagttttt ctgatttctc tggaaatgtg
      781 attttcctgt ctcaggactc aaagaataaa tccagtatat cttcagagtc actttgtaac
      841 cctgcatatg aaaaataact gacttcataa gaattaagta gaaattatat aacagaagac
      901 cagtttttaa catgatttaa aaaagccatt tattgtgtga cagcaatgtt taatatgtgt
      961 gtgtggtggt taatcagcaa ccatgaaaac catgttggct ggctggtatc tattgcatgc
     1021 ttctgatttt gcttcagtca aagcacagac ccgtaaattc caatttatgt agtggtcaaa
     1081 gagtccaaga tattttctca aaaaactaga agcatgtttc atagggttat agtggggcaa
     1141 atgggtatca tttcttctta ttctttgcac ttagctgcag gaggtactag ttagtgcctg
     1201 agatcttaat ccgtgcatgt ggcatgggac tttatgcatc cattttattc ataagaacat
     1261 gaagacaagt cacctcttat gaagtctcaa ggagcataca aaatattgac ctccaaataa
     1321 agtctttatg taaccccata tttcatttgt atagttttgt ttttgcattt aagcccatgg
     1381 catatcgctt agcacaggca tgtcaagatg aagtaccttt cttccctcct aagtgcaacc
     1441 aaaagtttca ccgaaaatct agccaagaat actcaacatt tactaagaaa aaatcaggac
     1501 atctctttct ttttcttcct gattgaaaaa taaaaaagaa cggttgtatt tttaactttt
     1561 tcctagagct ttctttttct actataaata ctatatacaa agctggaaga aataacatca
     1621 agattaaagt ggattaaact gaatctgaat gagcattcaa tatttagcaa tgttgtgtgg
     1681 gtaccagttg gggtacttga ttttggaatc agcagagtta acaggatagt ggttcacagg
     1741 ttgacactca caaaccagct ttggtcctag atacataagc agactgtgct tcctcagtcg
     1801 ctatgtggaa ttggaacaca gacactgagg agttggcaaa aatctgcata ttgattccct
     1861 gatctgtgtg tgatggcatg tcgtgattac aatggtcagt agaaattatt atatgtgctt
     1921 ctacttggga aaataatgaa tcaaaatcag taatcattct cttggaaacg ttctggagag
     1981 agtgccacca tcatgaacat gaaagattca gggtaatggt ttcaatcaac tctttgtgta
     2041 acttttctgt ttggcctacg cagaggacaa acagacattt ggacatggca gttataggtc
     2101 taattaggtg acggatcata ttgttgctgc cgtaccgtat gtgattttct tttttttttc
     2161 ttgtaagcaa actcatttat ctcctgatac cacatgcagc aactggtctg gcaaatgctt
     2221 tcccccctct atacctcttt gtaaggccca ccaaaaccaa tttactttca gaagtcaaaa
     2281 ccaccagtat tccttcactg tccagcctcg aaaacatatt aattctccca gagcccattt
     2341 ctctttttgt attatgtttt cttagacatg aatacttctg tattgatacc agatgtcttt
     2401 gttcagtgtt gcactaattt tgctgcaatg tttatcacct gaaataaaag cttaatatct
     2461 ga
//
