LOCUS       XM_039101346            3557 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus membrane spanning 4-domains A4A
            (Ms4a4a), transcript variant X1, mRNA.
ACCESSION   XM_039101346
VERSION     XM_039101346.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101346.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3557
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3557
                     /gene="Ms4a4a"
                     /note="membrane spanning 4-domains A4A; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 14 ESTs, 4 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     127 samples with support for all annotated introns"
                     /db_xref="GeneID:361734"
                     /db_xref="RGD:1307006"
     CDS             2592..3302
                     /gene="Ms4a4a"
                     /codon_start=1
                     /product="membrane-spanning 4-domains subfamily A member
                     4A isoform X1"
                     /protein_id="XP_038957274.1"
                     /db_xref="GeneID:361734"
                     /db_xref="RGD:1307006"
                     /translation="MITIQGTGQTALEAGYGAQQNGQPLYVDSHSWKRMTEKFLKGEP
                     KILGIVQIVIAIMNLSIGLMMIGATVSSGEILPISVYIGYPIWGSIMFIISGSFSIVA
                     GRRTTKGLVRSSLGLNITSSVFAFAGMIINSLSPSIYSFHVYFCTYRSTSEGCRMTLS
                     ILMGLDIVVVILSVLEFCIGISLSAYGCRVMCCNPGGVVIIMPSKPPMPETAYPVSLQ
                     SGLGPPEHQQKNVPGKSH"
ORIGIN      
        1 aacttccagg atgctcagag tcacaaatcc cgactttgtg tgtggcggtt cgtcatcacg
       61 atacagagaa tgaacatata tcccagcttc gggtgaagac tgactctcct ggaataaagg
      121 gggaatgttc taaagagaaa catgtccttt ccccttggct atcagacctt tcaaatggtg
      181 attcccaagt gattgaaagt cctcataaat tttgggctaa acagaagagc gaagtcctgg
      241 tgccaacaga agaggaatat gtctcatgga aagagtttct tgcagttctg acagtttgtc
      301 aggccacctt tcaggagaga gtggagccaa aacaatgatg aatcagtgct gggttaaact
      361 gcacctgtac caggactgct gagatatgca tttgtgtccc cttttattta aacttaaacc
      421 tcacgtgtag actctcacaa agcacttggg ggtctgggag atcattggat ctctttgttt
      481 tctcaatgta gccacatgga ataaatctcc tttctcaatt ctttgatatt aattttatct
      541 ttaactggcc cattgagaat gaatggtaga gtcgaactca ttaaggccac aaagactcta
      601 accctaatga ctcgagaatt aaatagtttt accagctaca aagcccaagg tcccagatct
      661 actccaaaaa tacatgcatt gtatgtatgt actgctgtgt cagatccagc ccttgtaagg
      721 gctaatttca tttcagctaa ttctcaccag tatggggaaa acaagaataa aataacctca
      781 aaccactgct actaagaaaa tctttctcct ccatccccca accttactaa taacttctac
      841 agcttcaacc accaaggcac cttcggtcat tgatgagatt cattacaact gaagaagcta
      901 catagagcct gtaccccagc attccctgaa acaaaagcac caccacatcc ccctccagtc
      961 catctgctgt tgaaagtttt gcttggttaa aatcgctctg taaaagtttt aaagaaatga
     1021 ctactgaatc agtacaaaag atctccatcc ttcctccact ctcttacatc tggttatctc
     1081 attcatcacg tctccttttg gatgtcatca ccttcagaaa gtcttctctt tagtttcaag
     1141 gccgggttta ctagggaccg atgatgaccg actcagtttg ttatatgtta cctggcaaag
     1201 cactggatag ccaggatttt agcatgtgta tttgtgtgtt ggcttgtctg aattttccag
     1261 aagcagataa actgctgagc agcagagtct atttgtattt ttctatacca ttttatctat
     1321 gacatattgc ttgatatatg gaaatttttc tctaagaaat tattgaatga ctaaaaattg
     1381 ctaaccactt tcctgtcctg tttgttgtgg tttggatgta tctatccttt gagaattcat
     1441 aagttgtagt tgtaatcttt agtggggaaa tgtgagggag gtggaagctt taagatgtgt
     1501 tgtctagaga cgagacaagg catcttcatc ttttcacctt cccacgtgct ctcaacctct
     1561 tagccagttt cccaccattt tcctatcttt catgttgtgt tgaacccaga gatcactaag
     1621 accagcaagt gccaaggcta tgcttttgag accctaaaat tgtgaatgaa ataagggtac
     1681 ttttatatgt aaattataca acaccaggta tatggtttta tagtaataaa gacaaactaa
     1741 tatttatgtt aaactgagga ttattttatt ttatcaatga acaatcttat attctggaag
     1801 atgacaagat cgtgtagtaa atctttacaa tagaatttct ctttaatgtg tctttggctt
     1861 tgaaaggggt tatttactta aacattgcaa agcactatcc ttttgtaacc gatgtgctgc
     1921 cccttgatgg acctttgttg taaatcccaa atggtagaat ttcacaaaaa acacacatga
     1981 aaagcatgca tatatagttt tctagaaacg gtaacaggaa aatgtgtaaa attgttacaa
     2041 acaggcattt gtaagttttt gctgtttaga gagaggttct ttttatgtag ctcaagtcag
     2101 ctacaagtca caattctctc gcctcagaat cctggataat gggtaatggg gttccaggaa
     2161 taagtcacca atctttcctg aaatggagtt ttcatggggg tttaagggcc acgataatga
     2221 ctttggtctg ttaaatatgg aattatacac tgatatggtc agtaaaacct gagctgctgc
     2281 tttttgtagg aaaggtcgtg ccagctgctg cttttccagt ggctttaaag aagccacatg
     2341 cccacaacca ggacgcagag tcagtgcata cttcagctaa ttcaaaaggg aactagatgt
     2401 gtttctcaag gtcctcagca gtgttcttta ggatttagga aacatactgg acttaattaa
     2461 gcttactgac accggagctg tggttaagtc actgcatctg aacaaagaac ctgaggtaca
     2521 ttcctggagt cagttcctca tctgacacat aacaggctct ccagctgaga agaaagtttg
     2581 tttctgccac catgataacc atacaaggaa caggacagac tgctttggaa gctggttatg
     2641 gggcacagca gaatggacaa cctttatatg tggattcaca ttcatggaag agaatgacag
     2701 agaagttctt gaagggagaa cccaaaatcc ttgggattgt gcagattgtg attgccatca
     2761 tgaacctcag tataggactc atgatgatag gtgccactgt gtcatccggt gaaatactcc
     2821 ctatttcggt gtacatagga tacccaattt gggggtccat aatgtttatt atttcaggat
     2881 cattttcaat tgtagcagga agaagaacta caaaaggttt ggttcgaagc agcctaggct
     2941 tgaacattac cagctccgtg tttgccttcg cagggatgat aatcaactca ctgagcccaa
     3001 gcatttattc tttccatgta tatttctgta catatagaag tacatcagaa ggctgtcgca
     3061 tgaccttgtc cattttaatg ggtctggata tcgtggtagt cattttaagt gtgctggaat
     3121 tctgcatagg aatatccctc tctgcctatg gatgcagggt gatgtgttgt aaccctggtg
     3181 gggtcgtgat aattatgcca tcaaagcctc ccatgccaga aacagcatat cctgtatcac
     3241 ttcaaagtgg tttggggcca ccagaacacc aacagaaaaa tgttccagga aaaagtcact
     3301 gattattttt caagaaccac acatgaaaaa gcacaagaat ccaactctga tgtctgtgca
     3361 tgtaggcatg agtgtacgct tgcttgtgca tgtacacacg tgcagtgtgt gtgtgtgtgt
     3421 gtgcgcgtat atgtgtgtgt gattcaaatg acattctcat gtttcaccag gaagttggca
     3481 gatcattcca cctgctctct ctataagact atcagaatgt aataaataaa ccatcaattt
     3541 actgggtaaa taacact
//
