LOCUS       XM_039101360            1028 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus membrane spanning 4-domains A3
            (Ms4a3), transcript variant X1, mRNA.
ACCESSION   XM_039101360
VERSION     XM_039101360.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101360.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1028
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1028
                     /gene="Ms4a3"
                     /note="membrane spanning 4-domains A3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 42 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:293753"
                     /db_xref="RGD:1310598"
     CDS             113..850
                     /gene="Ms4a3"
                     /codon_start=1
                     /product="membrane-spanning 4-domains subfamily A member 3
                     isoform X1"
                     /protein_id="XP_038957288.1"
                     /db_xref="GeneID:293753"
                     /db_xref="RGD:1310598"
                     /translation="MRWTCRGRTLSISEVFKEFHNTGLGTSPGRHMKPEETHDSVYRP
                     LDEIHHVQRGVLQALGAIQILNGILILALGIFLVCLKQLSHHFINFFFFTFYTGYPLW
                     GAVFFITSGSLSVAAGRSPTRTLMQNSFGMNIASTMIAFVGTAFLSVHLALNTLAFRA
                     CRSSQSPDICIFLGSSSNGLVSLMLIFTLLELALTISLSVMWCLGNVCGLREEISSSP
                     PNSVESGIPPEESDSENLITQPQTIEE"
ORIGIN      
        1 gttctgctga ggcattgcac aagggagaga tccgttaagt ctaaggaaga ggagactgct
       61 ggttttgggg gatagactct ggtgatcatt actgactgtc tcctcttctg taatgagatg
      121 gacttgcagg ggaaggactc tgtcaatttc tgaagtcttc aaggaatttc ataatacagg
      181 actggggacc tcaccaggca gacacatgaa gccagaggag acccatgatt ctgtttaccg
      241 acccttggat gagatacacc atgttcaaag aggagtactg caagcccttg gggccatcca
      301 gatcctgaat ggaatactga ttctagctct gggtattttt ttggtttgtt taaaacagtt
      361 gtcccaccac ttcatcaatt tcttcttctt caccttctac acaggctacc cactctgggg
      421 tgctgtgttt ttcatcacct caggatcttt gagtgttgca gcagggagaa gccccacaag
      481 aacgctgatg caaaacagtt ttgggatgaa cattgccagc acgatgattg catttgttgg
      541 gactgctttc ctttctgtac atttggcact caataccctg gctttcagag cttgccggtc
      601 ttcacagtca cctgatattt gcattttcct gggttcctca tcaaatggcc tggtgtcttt
      661 aatgctgatt ttcaccctgc tggagctggc cctgaccatt tcgctctcag tcatgtggtg
      721 cctaggaaat gtttgtggtt taagagagga gatcagttct tcacctccta attctgtgga
      781 gtcaggaata ccccctgaag aaagcgattc tgagaacctg atcacccagc ctcaaaccat
      841 cgaagagtga gaatttcatt gagaactcag gagggcataa acagatgaaa tacagtcctt
      901 ctgtcgtgga aatattcaca agaaagctgg catctgtccc aattctcccc atcctccctg
      961 taaatccact agcacggtct agatctagaa gaataaatac atttccttag gtgttcttgg
     1021 atttgcaa
//
