LOCUS       XM_006231100            3199 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus membrane spanning 4-domains A12
            (Ms4a12), transcript variant X1, mRNA.
ACCESSION   XM_006231100
VERSION     XM_006231100.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 1, 2024 this sequence was replaced by
            NM_001427651.1.
            
            On Jul 26, 2016 this sequence version replaced XM_006231100.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3199
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3199
                     /gene="Ms4a12"
                     /note="membrane spanning 4-domains A12; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, 1 Protein, and 97% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:293741"
                     /db_xref="RGD:1307162"
     CDS             741..1646
                     /gene="Ms4a12"
                     /codon_start=1
                     /product="membrane-spanning 4-domains subfamily A member
                     12 isoform X1"
                     /protein_id="XP_006231162.1"
                     /db_xref="GeneID:293741"
                     /db_xref="RGD:1307162"
                     /translation="MSKSRSETVAEREREPCGVGKLRKSTETTPPFSMGDIRTSFQTT
                     YPGMRGTIPNPYPPTSSMGLHPQQPLGFSNVGNQVRTGQVSFITSPGIFPNNQLGREN
                     VPRVNPAPGAATSNVKDAAVALGGVQITIGLMHIGFGVVLGLLSTSYSMTWAFYSTAF
                     IGGYPFWGGVFFIVSGSLSVSAFKKFSDCLVKSTLIINIFSIISAFVGVVLFLCDLNN
                     NGHYYQDYWMVLSGRGIAGVLAIFSLLEFSIAWATAYFAYQTILHGNRSVLVAPTVYA
                     ANHLMQESSPASPIYDNVPDYAVRQ"
ORIGIN      
        1 tggggtgggg tgtaagtgaa aagaattgac actgacccca cttgcttatt cgaaaaacac
       61 tcagtggctc tcaccatatg tgaaacttgc cagccatggg gcttttggag gcaagagcac
      121 acactggatc tctgatctta ggatacttgt ttgcacctct gagacacaac tggacattaa
      181 tagttagaat gcctccaaaa ttataacatg cctatattga gaattataag ggttgattga
      241 catgtaaagg tgttaatgaa acggtaagtt aaaagggttt attatagaaa atctactcaa
      301 tctgaccttg atttagtgag tttttataaa accatatgca tctgtatgta aaatgaaacc
      361 cgatgaatta tcctcagtag cagcatccag gtgtctggag cgtgggcact tttgctcctc
      421 ttctttctgc tcttcactgt ttgagatttg cagttgtgct tgtctgattt aaaaggcacg
      481 agaatgtggg gtggcactgc tttggcgagg gtgagaacgc aaaggggctg gagaaaggaa
      541 gaggaagtga ctggaagcat cagaactcac gtcccagcac gaatgagtca gaacacattt
      601 cccagcacga aatgcaaaca gcacattctc agatttacaa atggggtgaa agtgagcagc
      661 gaaaggactt tggaactatg tagagatggg ataggctcat ttgaagcaag gaagtaaagg
      721 tgcttaaaat ctccaggtaa atgtccaaga gcagatcaga aactgtagct gagagagaga
      781 gagagccctg cggtgttggg aagctgcgta agtccaccga gaccaccccg cctttctcaa
      841 tgggggacat aaggacatct ttccagacta cctaccctgg aatgcgtggc accattccga
      901 atccttaccc accaacaagt tccatgggtc ttcatcctca acaacctctg ggtttttcaa
      961 atgtaggaaa ccaagtacgg actgggcaag tttccttcat tacatctcca ggaatcttcc
     1021 ctaacaatca gctgggtcga gaaaatgtgc caagggtaaa tccagctcca ggagcagcaa
     1081 ccagcaatgt taaagatgct gcggtagcac ttgggggagt gcaaatcaca attggattga
     1141 tgcacattgg cttcggagtt gttcttgggt tactgagcac ctcttactct atgacttggg
     1201 cattttactc tactgctttt attggtggat atccattttg gggtggagtc tttttcattg
     1261 tttctggctc actctccgta tcagcattca agaagttctc tgactgtctg gtgaagagta
     1321 ccctgataat aaacattttt agcatcattt ctgcctttgt tggagtggtt ctgtttctgt
     1381 gtgatctgaa caataatggc cactattatc aagactactg gatggtgctt tctgggagag
     1441 gaattgcagg tgtgctggca atattttcct tgttggaatt cagcatagcg tgggccacgg
     1501 cctactttgc ataccaaact atcctccatg gcaacagatc tgtcctggtt gctccaactg
     1561 tgtatgcggc caaccacttg atgcaagagt cgtccccagc ttctcctata tatgacaacg
     1621 ttccagatta tgctgttagg cagtaacagg catgaagaat cactggtaca atttcatgta
     1681 gtaaaccttc tctgaaaata agctgttatt ttgctgccca tggtgcaaat ctaattagtg
     1741 cctgtatttg gaatttgttc ctaggctcat ggctaacagt cactgggttt ttaatcagtg
     1801 cctctttctg cttaccatta ccccaccaca gaggaaagac aagagggccg aaacctaact
     1861 gcagtgttct cagcatcaca aacattcttt tctcgttatc tttttcacaa taaaatgtca
     1921 tggggaacac agcctctggg tatctttctg catgtgctat gctctgataa agtaaatctg
     1981 acagaactgg caaggttgat atttcttaaa gatttttaca gtgtccaatc actggaattc
     2041 ggggtcatct tcccccatgt tctgttcaga aaccacagat ccaatcatgc ttgtttggac
     2101 ccatattatt ttatacatca atattgttac caaccagttg actaatttat tatttattat
     2161 taatttttta attttataaa ttaccatata cagtattaag tatcttaaaa gtaacttcta
     2221 ttcacccatt atacttgtcg tctcagaggc ctactactga ataagctcac cctttctagt
     2281 tctttctaaa ctttagctga ttggttcaac tcagctagtt gttctggccc aaactcctct
     2341 ccaagctgac cattcaaact ggtttctcac aacttctcac tcaattgctg tgtttggcct
     2401 caaactaact ctgggaatct attctaatct tctggcttct gttttcgcct acaacctgtc
     2461 tctgtaaaac tgtttcagta aaactgcctc tgctgatctt catggactgc acaaactcac
     2521 aaaggagcag atctccactg cactgactga atggaactca actagtctct tctctgaact
     2581 gtaccatacc taacccatac ctaaccacat tcaactgaac tgccgctctc cctctctcta
     2641 ggaagttctc ttaagtcacc tctccttcct atgctgctct catgagagct gggtatagcc
     2701 tatctctgac taactgagtc aaatcttcct ctgatttgtc actttgtctt tccctcaatt
     2761 agatgtcact ttcaaaccaa actggctgct tccttctata aactaacctt actttcattg
     2821 tttaggatta aaggtgtgta ttaagcgcat atctgtattc cagccagatc atattgtaat
     2881 ccgtggtatg cctgcattct agccagacta tacagaccta gaaggtattt tggatgaaat
     2941 ccctgacaga gcagccatgt tgctggatta aacttcttct acaaatatca ctatggaatt
     3001 aagagaattg cttttaatac atctttaaaa tataattaca tctctttccc tttccttact
     3061 acagcccgtc ctaggtcccc tccatctaac ttttcccatg tcccctccga ctctcaaata
     3121 gatagccttt tttctattac tgttgttaca tatatgatgt atatgaattt gtgtgtacaa
     3181 atacataaca ataacctgc
//
