LOCUS       XM_039087009            4077 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus myocardin related transcription factor
            B (Mrtfb), transcript variant X3, mRNA.
ACCESSION   XM_039087009
VERSION     XM_039087009.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087009.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4077
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4077
                     /gene="Mrtfb"
                     /note="myocardin related transcription factor B; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 ESTs, 1 long SRA read, 5 Proteins, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100362470"
                     /db_xref="RGD:1560833"
     CDS             399..3734
                     /gene="Mrtfb"
                     /codon_start=1
                     /product="myocardin-related transcription factor B isoform
                     X1"
                     /protein_id="XP_038942937.1"
                     /db_xref="GeneID:100362470"
                     /db_xref="RGD:1560833"
                     /translation="MDHRGALDTEEELGPLAHLAPSPQSEAVAHEFQELSLQSSQHLP
                     TLNERKNGSIVFGESGLQLPLPAQSVSTVLQLKLQQRRTREQLVDQGIMPPLKSPAAF
                     HEQIKSLERARTENFLKHKIRSRPDRSELVRMHILEETFAEPSLQATQMKLKRARLAD
                     DLNEKIAQRPGPMELVEKNILPVDSSVKEAIIGVVKEDYPHTHGEFSFDEDSSDALSP
                     DQPASQESQGSAASPSEPKVSASPPPVTASTPVQFTSVSPAVPEFLKSPVDQPPTRST
                     ASVLPTNTVSSAKSGPTLVKQSHPKNPNDKHRNKKCKDPKPRVKKLKYHQYIPPNQKG
                     EKSEPHMDSNYARLLQQQQLFLQLQILSQQQQQQQQQHYNYQTILPAPVKTDKNSSSS
                     SSSSSSSSTGVPARRPGPLPSSLDDLKVSELKTELKLRGLPVSGTKPDLIERLKPYQE
                     VTSNNLATGSIVAVSSAAIVTSNPEVTVTLPVTTLHNAVTNSVSTFKADLPPSGSSSV
                     PHVENAHSPLPISPSPSEQSSLSTDDTNMTDTFTEIMTMMSPSQFLCSSPLRVASHED
                     SLSPTSSTLSTLELDAAEKDRKLQEKEKQIEELKRKLEQEQKLVEVLKMQLEEEKRGQ
                     QRPPGPQPNGSTHPFTSDLKLGNVRSSVKDETSLPDCSSPQQSIPVPGHSVGQPISTG
                     SQTLVAKKAVVVKQEVPMAQTEQQNVVSQFYLSSQGQPPAFVAQPQALLTTQTTQLLL
                     PVSIQGSNVTSVQLPVGSLQLQTPAQGGVQAQPQVAAATQVPAAALPSALASALPQKQ
                     EAFPQHVLVQPQPVRKVFTNSAPNTVLQYQRQPGPATPQPFVSKTSNPAVQSRSTPLV
                     PLQNGPGPASKPSSPPPPQQFVVQHSLFATPVTKTKDPPRYEEAIKQTRSTQSALPEV
                     SSVHSQQMDDLFDILIKSGEISFPIKEKPSPISKMKPVTASITTMPVNTVVSRPPPQV
                     QIAPPVSLEPVNSLSASLENQLEAFLDGALPSANDIAPLQGSSEDREPLSLIEDLQND
                     LLSHSSMLYQSHSPMETSEAQFVSGTPCLSLDLSDPNLDNMEWLDITMPTTSSGLTPL
                     STTSPSMFSTDFLDPQDLPLPWD"
ORIGIN      
        1 caggacggga tccgcgcccg ccgcgttcag gcgggagggt aagcacgggg cggagcgaag
       61 tatcgcgaga tctggtggta gctgcagcag cagcggcggc ggcggcggcg gcggcggcgg
      121 cggcggcggc cggggaggtt cataataaag gtgctaagaa agagaatgta agagaggaaa
      181 atacatattt ttactgagga aagttcagcc tggcctcact tgtttgtgcc actctgcctt
      241 ccacattttg ggcagcctag cacatgtcag tgtagctgtt atcaccatag cgcactacac
      301 agtccttcct gcacatggat tacttgggca tttcccaaag ataggctgcg tgaaagaggt
      361 gtttcatact ttctattgct agtggctgga acaacacaat ggatcacagg ggagccttag
      421 atacagagga agagctgggg cctctagccc accttgcgcc aagccctcaa agtgaggctg
      481 tggctcacga attccaggaa ctgtctctac agtccagcca gcacttaccc actctgaacg
      541 aaaggaaaaa tggaagtata gtctttgggg agtcaggact gcagcttcct ctgccggctc
      601 agtctgtgag cacagtgctc cagctgaagc tgcaacagag gaggacaaga gagcagctag
      661 tggaccaggg catcatgcca cctctgaaga gtccagcagc attccatgag cagatcaaaa
      721 gcctggagcg agccagaact gaaaactttc tgaaacacaa gatccggagc cgcccagatc
      781 gttctgagct ggtcaggatg cacattttag aagaaacatt tgcagagcca tctcttcaag
      841 ccacacagat gaagttgaag agagctcggt tggcagatga cctgaatgag aagattgctc
      901 aaaggcctgg tcccatggag ctggtggaga agaacatcct tcctgtagat tcgagtgtca
      961 aggaagcgat tataggtgtg gtgaaggagg actatcctca cactcatggt gagttctcat
     1021 ttgatgaaga tagcagtgat gctttgtctc cagatcagcc agcgagccaa gagtcccagg
     1081 gctcagctgc atcccccagt gagccaaaag tcagtgcctc accacctcct gtcactgcaa
     1141 gcactccagt ccagtttacc tcagtgtccc cagcagttcc tgaattcttg aaaagccctg
     1201 tggaccagcc tcccacgagg tctacagctt ctgtcctccc cacgaacact gtgtcctcag
     1261 caaagtctgg cccaacactg gtgaagcaaa gccatcccaa gaatccaaac gacaaacacc
     1321 gtaacaaaaa atgcaaagac ccgaaacccc gagtgaagaa gctcaagtac caccagtaca
     1381 ttccgcccaa ccaaaaaggg gagaagagcg agccacacat ggactccaac tatgcccgcc
     1441 tgctccagca gcagcagctc ttcctacagc tgcagatcct gagccagcag cagcagcagc
     1501 aacagcagca gcactacaac taccagacca tcctgcccgc acctgtcaaa actgacaaga
     1561 acagcagcag cagcagcagc agcagcagca gcagcagcac aggtgtgccg gcgaggaggc
     1621 caggacccct gccttctagc ttggatgact taaaggtgtc agagctgaaa acagaactca
     1681 aactgagggg tctgccagtg tcaggaacta aaccagacct cattgaacgc ctgaaaccct
     1741 accaggaagt gaccagtaat aaccttgcca ctggcagtat tgtggcagtg tcatcagcag
     1801 ctattgtcac cagtaaccca gaggtcacag tgacactgcc agtcacaaca ctgcataatg
     1861 ctgtaaccaa ctctgtgtcc actttcaagg cagacttgcc accttctgga tccagcagtg
     1921 tgccccatgt cgaaaatgcc cattcccctt tgcccatctc gccatcaccc tccgagcagt
     1981 ccagtctcag taccgatgac acaaacatga cagacacctt cacggagatc atgaccatga
     2041 tgtcaccttc ccagttcttg tgttcatctc ccctgagggt ggcaagccat gaggacagcc
     2101 tgagccccac cagtagcacc ctgtcaaccc tagaactgga tgccgctgag aaggaccgca
     2161 agcttcagga gaaggagaag cagattgaag agctgaagag gaaactggaa caggaacaga
     2221 agctggtgga agtcctcaag atgcagctgg aggaggaaaa acgtgggcag cagcgacccc
     2281 caggtcctca gcccaatggt tccacacatc cctttacatc agatctgaaa cttggcaatg
     2341 tccggtcctc cgtcaaagat gagacctcac tccctgactg ctccagcccc cagcagtcca
     2401 tcccagtgcc tggccattct gtaggccagc ccatctccac aggtagccag acccttgttg
     2461 ccaaaaaggc tgtggtcgtc aagcaggagg tccccatggc ccaaacagag cagcagaatg
     2521 ttgtctcgca gttctacctg agctcccagg gacagccacc tgcctttgtt gctcagcctc
     2581 aggccttact gaccacacag acaacccagc tactgttacc ggtgtccatc cagggttcaa
     2641 atgttacttc agtgcaactc ccagtaggca gcctccaact ccagacacca gcacaaggag
     2701 gcgtccaggc tcagcctcag gtagctgcag ccacacaggt cccagcagca gccctgccct
     2761 cagccttggc ctcagccctg cctcagaagc aggaggcctt cccacagcat gtgttggtcc
     2821 agcctcaacc agtcagaaag gtcttcacaa actcggcacc aaacacagtt cttcagtacc
     2881 agagacagcc tggcccagcg accccgcagc cctttgtcag taagacctct aaccctgctg
     2941 ttcaatctag aagcacccca cttgtacccc tgcaaaatgg acctggccca gccagcaagc
     3001 ctagctcacc acccccacct cagcaatttg ttgtccagca ctctttgttt gcgaccccag
     3061 tcacaaagac aaaagatcca cctcggtatg aggaagccat caagcagaca cgcagcaccc
     3121 agtcagccct tccagaggtt tccagtgtgc acagtcagca gatggatgac ctcttcgaca
     3181 tcctcataaa gagtggagag atttccttcc cgataaaaga aaagccttct ccaatttcca
     3241 agatgaaacc agtgacagcc agcatcacta caatgccagt caatacagtg gtgtctcggc
     3301 ctccgccgca ggtccaaata gcaccgcctg tatccttaga acctgtgaac agtttatctg
     3361 ccagcctaga gaaccagctg gaagccttct tggatggagc tctgccctca gccaatgaca
     3421 ttgccccact acagggcagc agtgaggaca gagagccttt gtctctgatc gaggatctcc
     3481 agaacgactt gctgagtcac tccagcatgc tgtaccagtc tcactctccc atggagacct
     3541 ctgaggccca gtttgtgtca gggacgccct gtctgtctct tgacctgtca gaccccaacc
     3601 tggacaacat ggagtggctc gacatcacca tgcccaccac atcctctggg ctcactccac
     3661 tgagcaccac ttcaccaagc atgttctcta ctgattttct ggacccacag gacctgccac
     3721 tgccatggga ctaaggtcac aggtcacttg tctcagagct cataagattt ggaaacatga
     3781 aaacaatcct gaggccagtg cttagagctg gagccataac tgcactgtga aagttaaaat
     3841 aaatcgtcac agaaaaaaag gaaggccaca gcctggaagc caagtgtgag agactccaca
     3901 gagacagtcc ttgtgaaatg ccttagataa agccaaaggc caggctccat ccgcaggaag
     3961 tggctctggt caccagccac atttcatcag cgctgctctc ctcatgggcc taagaagagg
     4021 caagcagttc cacttgaaac accaggctac catgagggag ggagggaggg agggagg
//
