LOCUS       NM_001106505            2251 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus mitochondrial ribosomal protein S5 (Mrps5), mRNA.
ACCESSION   NM_001106505 XM_001078600 XM_215833
VERSION     NM_001106505.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2251)
  AUTHORS   Amunts,A., Brown,A., Toots,J., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Ribosome. The structure of the human mitochondrial ribosome
  JOURNAL   Science 348 (6230), 95-98 (2015)
   PUBMED   25838379
REFERENCE   2  (bases 1 to 2251)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 2251)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 2251)
  AUTHORS   Mootha,V.K., Bunkenborg,J., Olsen,J.V., Hjerrild,M.,
            Wisniewski,J.R., Stahl,E., Bolouri,M.S., Ray,H.N., Sihag,S.,
            Kamal,M., Patterson,N., Lander,E.S. and Mann,M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473949.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_215833.4, XM_001078600.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2251
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..2251
                     /gene="Mrps5"
                     /note="mitochondrial ribosomal protein S5"
                     /db_xref="GeneID:296134"
                     /db_xref="RGD:1308318"
     exon            1..241
                     /gene="Mrps5"
                     /inference="alignment:Splign:2.1.0"
     CDS             184..1482
                     /gene="Mrps5"
                     /note="28S ribosomal protein S5, mitochondrial"
                     /codon_start=1
                     /product="small ribosomal subunit protein uS5m"
                     /protein_id="NP_001099975.1"
                     /db_xref="GeneID:296134"
                     /db_xref="RGD:1308318"
                     /translation="MAAAVRAAGCLPALCSAPAGHFLSRQLSLNTFPVAATSFLAAKT
                     AFSHGSLSPRETRHNHCLTSLSHALQTQCCISSPSNWTGQQYRPYSFFTKLTAEELWK
                     GALAETGAGARKGRGKRTKKKKKKDLNKGQIIGEGRSGFLWPGLNVPLIKSGVVQNIG
                     QRSKEEQQKVEADMAEQREEWDRKRKIKVKRERGWSGNTWGGVSIGPPDPGPNGETYE
                     DFDTRILEVRNVFNMTAKEGRKKSVRVLVAVGNGNGAAGFAVGKAADRADAFRKAKNR
                     AIHYLHYIERYEGHTIFHDISLRFKRTHIRMKKQPRGYGLRCHRAIITICRLIGIKDM
                     YAKVNGSVNMLNLTRGLFHGLARQETHQHLADKKGLHVVEFREECGPLPIVVASPHGA
                     LSKEPEPEPEVPDTKLDWQDVKAMQGMKRSVWFNLKRSAT"
     exon            242..328
                     /gene="Mrps5"
                     /inference="alignment:Splign:2.1.0"
     exon            329..466
                     /gene="Mrps5"
                     /inference="alignment:Splign:2.1.0"
     exon            467..592
                     /gene="Mrps5"
                     /inference="alignment:Splign:2.1.0"
     exon            593..826
                     /gene="Mrps5"
                     /inference="alignment:Splign:2.1.0"
     exon            827..861
                     /gene="Mrps5"
                     /inference="alignment:Splign:2.1.0"
     exon            862..952
                     /gene="Mrps5"
                     /inference="alignment:Splign:2.1.0"
     exon            953..999
                     /gene="Mrps5"
                     /inference="alignment:Splign:2.1.0"
     exon            1000..1057
                     /gene="Mrps5"
                     /inference="alignment:Splign:2.1.0"
     exon            1058..1120
                     /gene="Mrps5"
                     /inference="alignment:Splign:2.1.0"
     exon            1121..1257
                     /gene="Mrps5"
                     /inference="alignment:Splign:2.1.0"
     exon            1258..2251
                     /gene="Mrps5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccctctgtgg tccacatgga cagttttttc gacctccgtg tgccctgaat ggtgatcctc
       61 gagtctcagc tcacctctct gagctgatga tggacatctg acgaggcgcg gttgtagccc
      121 gtcgctgcag gcggtgagga aggcggttcc agagacaggc agagtcgctg ctccggctcc
      181 aacatggcgg cggccgtacg cgctgcgggc tgtctccccg cactgtgtag cgcgccggca
      241 ggtcatttcc tgtctaggca gctctcttta aacacctttc cagtagcagc cacttccttt
      301 ttggcagcga agacagcttt cagccatggc tctttgtcac caagggaaac aagacacaac
      361 cactgtctga ccagcttgag ccatgcactg cagacacagt gctgcatttc ctctcccagc
      421 aactggacgg gccagcagta cagaccctac agcttcttca ccaaattgac tgcagaagaa
      481 ctctggaaag gtgcactagc agagactgga gctggagcaa ggaaaggcag aggcaaaagg
      541 acaaagaaga agaagaagaa ggatttgaac aaaggccaga ttattggtga agggcgttct
      601 ggtttcctgt ggcctggttt gaatgttcct cttataaaaa gtggagttgt tcagaacatt
      661 ggccagcgaa gcaaagaaga gcagcagaag gtggaggccg acatggctga gcagagggaa
      721 gagtgggacc ggaagaggaa gataaaagtt aaacgggagc gcggctggag tgggaacacg
      781 tggggaggtg tcagtattgg ccccccagac ccgggaccca atggagaaac ctatgaagac
      841 tttgatacca ggattcttga ggtaagaaat gttttcaata tgacagcaaa agagggaaga
      901 aagaagtcag tccgtgtcct ggttgctgtt gggaatggaa acggtgctgc aggttttgcc
      961 gtcgggaaag ccgctgaccg ggcagacgct ttcagaaagg caaagaaccg agcgattcat
     1021 tatttgcatt atatagaacg atatgaagga cacacaatat tccatgatat ttcactaaga
     1081 ttcaaaagga cacatatccg gatgaagaaa cagcccagag gttacggcct ccgctgccac
     1141 agggccatta tcaccatctg ccgcctcatc ggcatcaagg acatgtatgc gaaggtcaat
     1201 gggtccgtga acatgctcaa cctcacccgg ggcctcttcc atggcctcgc ccgccaggaa
     1261 acccaccagc atctggctga taagaagggt ctccacgtgg tggaattccg ggaggaatgt
     1321 gggcctctgc ctattgtggt tgcctcccct catggggcct tgagtaagga gcctgagccc
     1381 gaacctgagg tccctgatac caaactggac tggcaagacg taaaggccat gcagggaatg
     1441 aagcgctctg tgtggtttaa cttaaagagg tcggccacct gaacatccag cctgccccgc
     1501 ctgtgccggc tgctgacagc acctgaagac tccacccctc gcctggatgt gctgtctttt
     1561 ttattttaaa aaagtctaac ctttgttttc aaataaataa ttatagactt ggtttactga
     1621 gcgcatggca tattgcggtg tgacaggaaa gttgcatgca aatagcagga gcgattcctt
     1681 atttaaacta gtaaggacga gtgaactgga acagctgttg ccgtgacaac taaagcttta
     1741 caactaaagt agtaaagtgt ttactactga gtcatccaaa aatgaatgct ttcaactaca
     1801 ttttacagag aagtggggta gcctgaccca ctgagccact cacctccagg cagacgccag
     1861 cagtgtgccg tttctgttct ataacttctg taccaggctg tggtctcacc cctggctctg
     1921 tttactggtc tctgggtgat ggtgattccg gtgtgtctga agttgtctcc ctgtcacctt
     1981 cactcacaag cccctgaaag ctaatggtgt tgtgtcctca ttgcttattg ggtattgatg
     2041 cggcccattc agatcctttg cccacttaga aaactgggct atttgtgctt tattatcagc
     2101 tataattgtt ctttgttgtg catttagaca cagctctatc atacagttgg gttctgggat
     2161 ttttgttgtt ttgttttttg tcttctctga cagacttgcc ttacttacct ttaattggca
     2221 tttttaggtc atcagcatat aaagtggctg t
//
