LOCUS       NM_001106628            2239 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus mitochondrial ribosomal protein S35 (Mrps35),
            mRNA.
ACCESSION   NM_001106628 XM_001074321 XM_216306
VERSION     NM_001106628.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2239)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JACYVU010000151.1.
            
            [WARNING] On Mar 29, 2024 this sequence was replaced by
            NM_001106628.3.
            
            On Nov 27, 2020 this sequence version replaced NM_001106628.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR8487227.49326.1,
                                           SRR8487226.134592.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132265, SAMD00132266
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-137               JACYVU010000151.1  16275152-16275288
            138-175             JACYVU010000151.1  16278545-16278582
            176-343             JACYVU010000151.1  16280522-16280689
            344-404             JACYVU010000151.1  16282764-16282824
            405-544             JACYVU010000151.1  16289241-16289380
            545-654             JACYVU010000151.1  16293368-16293477
            655-724             JACYVU010000151.1  16295051-16295120
            725-2239            JACYVU010000151.1  16304307-16305821
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q44"
     gene            1..2239
                     /gene="Mrps35"
                     /note="mitochondrial ribosomal protein S35"
                     /db_xref="GeneID:297727"
                     /db_xref="RGD:1306720"
     exon            1..137
                     /gene="Mrps35"
                     /inference="alignment:Splign:2.1.0"
     CDS             32..994
                     /gene="Mrps35"
                     /note="28S ribosomal protein S35, mitochondrial"
                     /codon_start=1
                     /product="small ribosomal subunit protein mS35"
                     /protein_id="NP_001100098.1"
                     /db_xref="GeneID:297727"
                     /db_xref="RGD:1306720"
                     /translation="MAAASLQLRLTLYPGARGLRTFSSVARPAAPRAGPRTVSRGERP
                     MRRKALPPRTEKMETDQDWPSVYPTAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNVEL
                     LKIPNFLHLTPVAIKRHCGALKDFCTEWPAALDSDEKCEKHFPVEIDTADYVSSGPSI
                     RNPRARAVTLRVKLSSLNLDNHAKKKLIKLVGERYCKTTDVLTIKTDRCPLKRQNYDY
                     AMYLLTVLYHESWKTEEWEKNKTEEDMDEYVWAKSSSENSVLQTLLQMRAAESSVAPS
                     REELLGTKEVEDYQKCVVRLKNEGENEASLAQYKESVKRLLNLA"
     exon            138..175
                     /gene="Mrps35"
                     /inference="alignment:Splign:2.1.0"
     exon            176..343
                     /gene="Mrps35"
                     /inference="alignment:Splign:2.1.0"
     exon            344..404
                     /gene="Mrps35"
                     /inference="alignment:Splign:2.1.0"
     exon            405..544
                     /gene="Mrps35"
                     /inference="alignment:Splign:2.1.0"
     exon            545..654
                     /gene="Mrps35"
                     /inference="alignment:Splign:2.1.0"
     exon            655..724
                     /gene="Mrps35"
                     /inference="alignment:Splign:2.1.0"
     exon            725..2239
                     /gene="Mrps35"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcttgtccgt tctggctcgc cgtccttcag catggctgcc gcttcgctgc agctaaggct
       61 gaccctatac ccgggagcgc gcggcctgcg caccttctcc tcagtcgcca ggcccgcggc
      121 tccaagagcc ggcccgcgta cagtatccag aggtgaaagg ccgatgagaa gaaaggcact
      181 gcctcctagg acggagaaga tggagactga ccaggactgg cccagcgttt accctactgc
      241 tgcaccgttt aaaccctcgg ctgttcctct acctgttcga atgggatatc cagtgaagaa
      301 gggtgtgccc atggcgaagg aggggaatgt agagcttcta aagatcccaa attttctgca
      361 tttgactcct gtggcaatta aaaggcactg cggagctcta aaagatttct gcactgagtg
      421 gccagctgca ctcgacagtg atgagaaatg tgagaagcat tttccagtcg agattgacac
      481 agcggattat gtgtcatcag gaccgtccat tcgaaacccc agagcgcgag cggtaacttt
      541 aagggttaaa ctttccagtt tgaatttaga caatcatgca aagaaaaaac ttattaaact
      601 tgtaggcgag cggtactgca agactactga tgtgctcact atcaagacag acagatgccc
      661 tttgaagcgg cagaactatg actatgcaat gtatctcctt acagtcctgt accatgaatc
      721 ttggaaaact gaagaatggg aaaaaaataa gactgaggaa gacatggatg agtatgtgtg
      781 ggcgaagagc tcctcggaga acagcgtcct ccagaccctg ctgcagatga gagctgccga
      841 gagcagtgtg gcgccgagca gagaagagct gctggggact aaagaggtcg aagattacca
      901 gaagtgtgtc gttcgtctca agaatgaggg ggagaacgag gcaagccttg ctcagtacaa
      961 agagtctgtg aagagattat taaatttggc ctgaagtctg aactagaaac ctctgtatta
     1021 attttataat gtatttagtc actggtttga tataaatggg agaatactta agaatactgt
     1081 cttaggtagc attgtgcctt tcagactctt gtgctgtggg ggtcaggatg gggctaggga
     1141 ttgtggtttc tatgtttctg gcatattttg accttttttt tttttttttt tttgttcttt
     1201 ttttcggagc tggggatcga acccagggcc ttgcgcttcc taggcaagct ctctaccact
     1261 gagctaaatc cccaacccct tgaccttttt tttttttttt tttttttttt tttttttttg
     1321 gttctttttt ttcggagctg gggagctggg gactgaaccc agggccttgc gcttcctagg
     1381 taagctgacc gaacccaggg ccttgcgctt cctaggtaag cgctctaccg ctgagctaaa
     1441 tccccagccc cccttgacct tatttttata catcacctta atcctccccc aatttcagag
     1501 cataattttt tgattagctg ctatgtctcc actgtttggg tttagtgatt gcttttgatc
     1561 aataactttg gttactaagg atacctagcc cagtgcctga ccaagccctc agtgcccctc
     1621 tgtggccagc ctcgaggagg ctgcactctc ctgtggactg cagccaggct agctcttgct
     1681 cctcatccac cccagcatca cattcaatgg tgctctgtct cacaggccac ttagcagcag
     1741 acagaaaact ctcctggtag ctgtcccttt gcagctggcc tttgcaggtg gcttagtttc
     1801 atagcttagg tagtgagccg cacagcagca cagcaccagt actaataaga tttggttttt
     1861 gttgtgagaa cagagaacac agacaaccaa ccaatcctgg aggatgtaaa gctgttatgg
     1921 caaaaactgc atccagatgt gctggccact tcctgattta ggcttgtgtg atagaggatt
     1981 ggggttcccc gtggaaacaa gtgattagct gctcgaccca cccacagctg cctgtcttgc
     2041 agtctgaagt tctctgcctt cctgtggcca tttgatattg tgtaagctct gattagctaa
     2101 actctgcctc tagagctcat tgtcccaggc ccagctggca ggaaggatag gtggagacct
     2161 gcccacagcc ttctctctgc tccttctgcc cttacagtca cagctcagta gaaaacgtgg
     2221 gccaggacaa cagatggct
//
