LOCUS       NM_001106091            1361 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus mitochondrial ribosomal protein S31 (Mrps31),
            mRNA.
ACCESSION   NM_001106091 XM_001073425 XM_214383
VERSION     NM_001106091.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1361)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 1361)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 1361)
  AUTHORS   Mootha,V.K., Bunkenborg,J., Olsen,J.V., Hjerrild,M.,
            Wisniewski,J.R., Stahl,E., Bolouri,M.S., Ray,H.N., Sihag,S.,
            Kamal,M., Patterson,N., Lander,E.S. and Mann,M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
REFERENCE   4  (bases 1 to 1361)
  AUTHORS   Tchernev,V.T., Mansfield,T.A., Giot,L., Kumar,A.M., Nandabalan,K.,
            Li,Y., Mishra,V.S., Detter,J.C., Rothberg,J.M., Wallace,M.R.,
            Southwick,F.S. and Kingsmore,S.F.
  TITLE     The Chediak-Higashi protein interacts with SNARE complex and signal
            transduction proteins
  JOURNAL   Mol Med 8 (1), 56-64 (2002)
   PUBMED   11984006
REFERENCE   5  (bases 1 to 1361)
  AUTHORS   Arden,S.D., Roep,B.O., Neophytou,P.I., Usac,E.F., Duinkerken,G., de
            Vries,R.R. and Hutton,J.C.
  TITLE     Imogen 38: a novel 38-kD islet mitochondrial autoantigen recognized
            by T cells from a newly diagnosed type 1 diabetic patient
  JOURNAL   J Clin Invest 97 (2), 551-561 (1996)
   PUBMED   8567980
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473970.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_214383.4, XM_001073425.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158691.1, SRR8487231.45588.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1361
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16q12.5"
     gene            1..1361
                     /gene="Mrps31"
                     /gene_synonym="MRP-S31; S31mt"
                     /note="mitochondrial ribosomal protein S31"
                     /db_xref="GeneID:290850"
                     /db_xref="RGD:1307668"
     exon            1..172
                     /gene="Mrps31"
                     /gene_synonym="MRP-S31; S31mt"
                     /inference="alignment:Splign:2.1.0"
     CDS             48..1211
                     /gene="Mrps31"
                     /gene_synonym="MRP-S31; S31mt"
                     /note="28S ribosomal protein S31, mitochondrial"
                     /codon_start=1
                     /product="small ribosomal subunit protein mS31"
                     /protein_id="NP_001099561.1"
                     /db_xref="GeneID:290850"
                     /db_xref="RGD:1307668"
                     /translation="MLHRIPAFIRPRPFSGLPLSCGNREVSVAASVLPAAGSGAVRTE
                     NTIQRHFCTSRSICSKKDDQSVPANETSQKAAESQGEGKETLKKNLLDVIKDMKVQLN
                     TANVKTTKPRGRQPPAHLETAVGRLQKALGEPPRKRNEFLSPELVAAASAVADSLPFD
                     KQTTKSELLKQLQQHEEESRAQTDRQKRRVSFTQIISNMKIAKSPSMRVSSRPQHQIQ
                     FDEEVDSSLSQEKPADFRRRKCLFKGKRLSIFDVKAFDDEAPEPEAAPSLWEIEFAKQ
                     LATVSEQPFGNGFEEMIQWTKEGKLWEFPVNNEAGLDDDGSEFHEHIFLEKHLEDFPK
                     QGPIRLFMELVTCGLSKNPYLSVRQKVEHIEWFRNYFNEKRDILKENNIHLTS"
     exon            173..460
                     /gene="Mrps31"
                     /gene_synonym="MRP-S31; S31mt"
                     /inference="alignment:Splign:2.1.0"
     exon            461..619
                     /gene="Mrps31"
                     /gene_synonym="MRP-S31; S31mt"
                     /inference="alignment:Splign:2.1.0"
     exon            620..760
                     /gene="Mrps31"
                     /gene_synonym="MRP-S31; S31mt"
                     /inference="alignment:Splign:2.1.0"
     exon            761..834
                     /gene="Mrps31"
                     /gene_synonym="MRP-S31; S31mt"
                     /inference="alignment:Splign:2.1.0"
     exon            835..978
                     /gene="Mrps31"
                     /gene_synonym="MRP-S31; S31mt"
                     /inference="alignment:Splign:2.1.0"
     exon            979..1361
                     /gene="Mrps31"
                     /gene_synonym="MRP-S31; S31mt"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagtttgtgt ttccggttgt gctcttgctt gagtttgttt ttacacgatg ctccacagaa
       61 ttccagcgtt tatacgtcct cgtcctttct cgggcctccc tttgtcctgt ggaaacaggg
      121 aggtctcggt ggctgcgagt gtgctacccg cggctgggtc cggagctgtc aggacagaaa
      181 atactatcca aagacatttc tgcactagca gatccatctg tagtaagaaa gatgaccagt
      241 ctgttccagc caatgaaact tcccagaagg cagcggagag ccaaggcgag ggaaaggaga
      301 ctttgaagaa aaacctgctg gacgttatta aggacatgaa agtgcaactg aacacagcaa
      361 atgtaaaaac aacaaagccg cgtggcagac aacctcctgc ccatctggag accgcagtcg
      421 gcaggcttca gaaggccctg ggagaacctc caaggaagag aaatgagttc ctgagtcctg
      481 agttggtggc agcggcatct gctgttgcgg attctctgcc tttcgacaag cagacgacca
      541 agtcagagct gctcaagcag ctgcagcaac acgaggaaga gtcaagggct cagacagaca
      601 gacagaagcg cagggttagc ttcactcaaa taatatcgaa tatgaaaatt gccaaatccc
      661 cttcgatgag agttagttca agaccacagc accagattca gtttgacgaa gaagtggaca
      721 gttcgcttag ccaggagaag ccagctgatt tcagaaggag gaaatgtttg ttcaagggga
      781 aaagactttc gatttttgat gttaaggcgt ttgacgacga agcacctgaa ccagaagcag
      841 caccttctct ctgggagata gaatttgcta agcaattagc cacagtaagc gaacagccgt
      901 ttgggaatgg gtttgaggag atgatacagt ggacaaagga ggggaaactg tgggagttcc
      961 cagttaacaa tgaagcaggt cttgacgatg atggctcaga gttccatgag catatatttt
     1021 tggagaagca cctggaggat ttccccaagc aaggaccaat tcgcctgttc atggagctgg
     1081 tgacctgtgg cctctcgaaa aacccatatc tgagcgttag acagaaggtc gagcatatag
     1141 agtggttcag aaattatttt aatgaaaaaa gagatattct caaagaaaat aacattcact
     1201 taacatcatg aggaaaaatt tttatttaaa ctgttgaaaa tgtatattat agctaagtaa
     1261 aaattttatc aaaattctcc tgtgttgatt actgtacctg atgtgatgca gataactgtg
     1321 aaattacttt taacttgaaa tacattcata ttatctatct g
//
