LOCUS       NM_001126094             620 bp    mRNA    linear   ROD 19-SEP-2024
DEFINITION  Rattus norvegicus mitochondrial ribosomal protein S21 (Mrps21),
            transcript variant 1, mRNA.
ACCESSION   NM_001126094 XM_001057820 XM_001057872 XM_001068942 XM_001068993
VERSION     NM_001126094.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 620)
  AUTHORS   Mootha,V.K., Bunkenborg,J., Olsen,J.V., Hjerrild,M.,
            Wisniewski,J.R., Stahl,E., Bolouri,M.S., Ray,H.N., Sihag,S.,
            Kamal,M., Patterson,N., Lander,E.S. and Mann,M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
REFERENCE   4  (bases 1 to 620)
  AUTHORS   Da Cruz,S., Xenarios,I., Langridge,J., Vilbois,F., Parone,P.A. and
            Martinou,J.C.
  TITLE     Proteomic analysis of the mouse liver mitochondrial inner membrane
  JOURNAL   J Biol Chem 278 (42), 41566-41571 (2003)
   PUBMED   12865426
REFERENCE   5  (bases 1 to 620)
  AUTHORS   Cavdar Koc,E., Burkhart,W., Blackburn,K., Moseley,A. and
            Spremulli,L.L.
  TITLE     The small subunit of the mammalian mitochondrial ribosome.
            Identification of the full complement of ribosomal proteins present
  JOURNAL   J Biol Chem 276 (22), 19363-19374 (2001)
   PUBMED   11279123
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1 and CB808996.1.
            
            On Nov 27, 2013 this sequence version replaced NM_001126094.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript. Variants 1 and 2 encode the same protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BF559319.1, CB808996.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMN12840105
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-238               JAXUCZ010000002.1  186102394-186102631 c
            239-620             CB808996.1         1-382
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..620
                     /gene="Mrps21"
                     /note="mitochondrial ribosomal protein S21"
                     /db_xref="GeneID:689432"
                     /db_xref="RGD:1592330"
     exon            1..311
                     /gene="Mrps21"
                     /inference="alignment:Splign:2.1.0"
     CDS             229..492
                     /gene="Mrps21"
                     /EC_number="3.6.5.3"
                     /note="28S ribosomal protein S21, mitochondrial"
                     /codon_start=1
                     /product="small ribosomal subunit protein bS21m"
                     /protein_id="NP_001119566.1"
                     /db_xref="GeneID:689432"
                     /db_xref="RGD:1592330"
                     /translation="MAKHLKFIARTVMVQEGNVEGAYRTLNRILTTDGLIDVIKRRRY
                     YEKPCRRRQRESYETCRRIYNMEMARKINFLMRKNRADPWLGC"
     exon            312..605
                     /gene="Mrps21"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aactactgag acatttctcc agacctactt gtactttcta agatatttag aattcctcct
       61 gcccagttct acggttcctg agctggctct aattctagat tgagtaaaac caccaccagt
      121 ggtaacgcgt gactctgatg ggctttgttc tctcatattg ggtctctggt ttccatgctc
      181 cttgtccagt ctataggtcc tgaagaatga agatttaaat tcaaggtcat ggctaaacat
      241 ctgaagttca ttgccaggac tgtgatggtt caggagggga acgtggaagg tgcctacagg
      301 accctgaaca gaatcctcac caccgacggg cttattgacg tcataaagcg acgacgctac
      361 tatgagaagc cttgccgccg ccgccagagg gagagctatg aaacatgccg gaggatctac
      421 aacatggaaa tggctcgaaa gattaacttc ttgatgcgaa agaaccgtgc agacccatgg
      481 ctgggctgct aaggcttgag cccacattgt ttctacgtcc aactcctttt tttatgcaac
      541 caatttctgt tacttttctc cacaataaac tcaatcacag gtgaacaaga aggcttggac
      601 atacaaaaaa aaaaaaaaaa
//
