LOCUS       NM_001109148             892 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus mitochondrial ribosomal protein S11 (Mrps11),
            mRNA.
ACCESSION   NM_001109148 XM_001059288 XM_574478
VERSION     NM_001109148.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 892)
  AUTHORS   Amunts,A., Brown,A., Toots,J., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Ribosome. The structure of the human mitochondrial ribosome
  JOURNAL   Science 348 (6230), 95-98 (2015)
   PUBMED   25838379
REFERENCE   2  (bases 1 to 892)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 892)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 892)
  AUTHORS   Camara,Y., Asin-Cayuela,J., Park,C.B., Metodiev,M.D., Shi,Y.,
            Ruzzenente,B., Kukat,C., Habermann,B., Wibom,R., Hultenby,K.,
            Franz,T., Erdjument-Bromage,H., Tempst,P., Hallberg,B.M.,
            Gustafsson,C.M. and Larsson,N.G.
  TITLE     MTERF4 regulates translation by targeting the methyltransferase
            NSUN4 to the mammalian mitochondrial ribosome
  JOURNAL   Cell Metab 13 (5), 527-539 (2011)
   PUBMED   21531335
REFERENCE   5  (bases 1 to 892)
  AUTHORS   Mootha,V.K., Bunkenborg,J., Olsen,J.V., Hjerrild,M.,
            Wisniewski,J.R., Stahl,E., Bolouri,M.S., Ray,H.N., Sihag,S.,
            Kamal,M., Patterson,N., Lander,E.S. and Mann,M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473980.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001059288.1, XM_574478.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DV722498.1, FM067484.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q31"
     gene            1..892
                     /gene="Mrps11"
                     /gene_synonym="RGD1559901"
                     /note="mitochondrial ribosomal protein S11"
                     /db_xref="GeneID:499185"
                     /db_xref="RGD:1559901"
     exon            1..138
                     /gene="Mrps11"
                     /gene_synonym="RGD1559901"
                     /inference="alignment:Splign:2.1.0"
     CDS             74..649
                     /gene="Mrps11"
                     /gene_synonym="RGD1559901"
                     /note="28S ribosomal protein S11, mitochondrial"
                     /codon_start=1
                     /product="small ribosomal subunit protein uS11m"
                     /protein_id="NP_001102618.1"
                     /db_xref="GeneID:499185"
                     /db_xref="RGD:1559901"
                     /translation="MQVVRNSGSWLLRSWAGSGMTRLVAITPAKSIHTGAPRLEDSAA
                     RQNTEKEAAPSRFSIYPPVPGQESSLQWAGMKFEEVPIAHIKATYNNTQIQVVSATNT
                     SLARASCGTEGFRNAKKGTGIAAQTAGIAAAAKATGKGVTHIRVVVKGIGPGRWSAIK
                     GLTMGGLEVISITDNTPVPHNGCRPRKARRL"
     exon            139..246
                     /gene="Mrps11"
                     /gene_synonym="RGD1559901"
                     /inference="alignment:Splign:2.1.0"
     exon            247..345
                     /gene="Mrps11"
                     /gene_synonym="RGD1559901"
                     /inference="alignment:Splign:2.1.0"
     exon            346..475
                     /gene="Mrps11"
                     /gene_synonym="RGD1559901"
                     /inference="alignment:Splign:2.1.0"
     exon            476..541
                     /gene="Mrps11"
                     /gene_synonym="RGD1559901"
                     /inference="alignment:Splign:2.1.0"
     exon            542..892
                     /gene="Mrps11"
                     /gene_synonym="RGD1559901"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgcccccac agatgctcat ggtggggctc atggctaaac cgagacggga gctgacgagg
       61 gtcaatttca gtcatgcagg ttgtaagaaa ctccgggtcg tggctcctgc ggtcctgggc
      121 tggatctggg atgaccaggc ttgtggccat taccccagct aagagtatcc acaccggagc
      181 cccgaggtta gaagactcag ctgccaggca gaacactgaa aaggaagcgg ctccgagtcg
      241 cttcagcatt taccctccgg ttccaggcca ggaaagctcc ctgcagtggg cagggatgaa
      301 atttgaggaa gtcccaattg cacacattaa agcaacctac aacaacacac agatccaggt
      361 agtctctgcc actaacacgt ccctggcccg cgcctcctgt ggcacggaag gctttcgcaa
      421 tgccaagaag ggcaccggca tcgcagcaca gacggcaggc atagctgcag cagcaaaagc
      481 cacaggcaaa ggagtgaccc acatcagagt cgtagtgaaa ggcattggac caggacgctg
      541 gtctgccatc aaaggactga ccatgggtgg tctggaagtg atctccatca cagacaacac
      601 ccctgtccca cacaatggct gccgaccccg gaaggctcga agactgtgat agcaaggaaa
      661 cctggacctg aacctgacct aaagtcttga ctcaggtgga tcctacagaa agcccactgt
      721 ggaggctgct ggagcgggct gttctcgagc cttccttggg agaacattcc tctccttgca
      781 cagaagctgg aggtgccgag gctggcctct tggacatgag ggagtgggaa ctgctggcca
      841 ctgtggccag ctccagcctc tgctctgaaa ataaaggact gttctctgta gt
//
