LOCUS       NM_001108665            1796 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus mitochondrial ribosomal protein L50 (Mrpl50),
            mRNA.
ACCESSION   NM_001108665 XM_001054942 XM_342835
VERSION     NM_001108665.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1796)
  AUTHORS   Brown,A., Rathore,S., Kimanius,D., Aibara,S., Bai,X.C., Rorbach,J.,
            Amunts,A. and Ramakrishnan,V.
  TITLE     Structures of the human mitochondrial ribosome in native states of
            assembly
  JOURNAL   Nat Struct Mol Biol 24 (10), 866-869 (2017)
   PUBMED   28892042
REFERENCE   2  (bases 1 to 1796)
  AUTHORS   Brown,A., Amunts,A., Bai,X.C., Sugimoto,Y., Edwards,P.C.,
            Murshudov,G., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Structure of the large ribosomal subunit from human mitochondria
  JOURNAL   Science 346 (6210), 718-722 (2014)
   PUBMED   25278503
REFERENCE   3  (bases 1 to 1796)
  AUTHORS   Mootha,V.K., Bunkenborg,J., Olsen,J.V., Hjerrild,M.,
            Wisniewski,J.R., Stahl,E., Bolouri,M.S., Ray,H.N., Sihag,S.,
            Kamal,M., Patterson,N., Lander,E.S. and Mann,M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001108665.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.2789596.1,
                                           SRR26643296.15200.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676809, SAMN16676811
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-121               JAXUCZ010000005.1  68667967-68668087   c
            122-1796            JAXUCZ010000005.1  68662933-68664607   c
FEATURES             Location/Qualifiers
     source          1..1796
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q22"
     gene            1..1796
                     /gene="Mrpl50"
                     /note="mitochondrial ribosomal protein L50"
                     /db_xref="GeneID:362517"
                     /db_xref="RGD:1308008"
     exon            1..121
                     /gene="Mrpl50"
                     /inference="alignment:Splign:2.1.0"
     CDS             30..509
                     /gene="Mrpl50"
                     /note="39S ribosomal protein L50, mitochondrial"
                     /codon_start=1
                     /product="large ribosomal subunit protein mL50"
                     /protein_id="NP_001102135.1"
                     /db_xref="GeneID:362517"
                     /db_xref="RGD:1308008"
                     /translation="MAALCVCRFARRGWLWKPPLATRREFWSRSRKEKELVVAETVEE
                     VKKAPALVCPPLRSRAYTPPSDLQSRLESHIKEVLGSSLPNNWQDISLDDGHVKFRLL
                     ANLADDLGHAVPNSRLHQMCRVRDVLDFYNVPVQDRSKFDELIASNLPPNLKISWNY"
     exon            122..1796
                     /gene="Mrpl50"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acgtcggcgc tttggggagc ttgtcgaaga tggcggcgct gtgtgtgtgt cggtttgcaa
       61 gaagaggctg gctgtggaag cctcccttgg ctacacgtag agaattctgg tctagatcca
      121 ggaaggagaa ggagctggtg gtggccgaga cagtggaaga agtgaaaaaa gcacctgctt
      181 tggtgtgtcc acccttacga agccgagcat acacaccacc cagtgatctc cagagtcgct
      241 tggaatctca tattaaagaa gttcttggtt catctcttcc taataattgg caagatatct
      301 ccctggatga tggacatgtg aagttcagac tcctagcaaa tttagctgat gacttaggcc
      361 atgcagtacc taactccagg cttcaccaaa tgtgcagggt cagagatgtt cttgatttct
      421 ataatgttcc tgttcaagac agatctaaat ttgatgaact cattgctagt aatttacctc
      481 ccaatttgaa aatcagttgg aattactgag cagtccagtc agaacacagt gagatcattc
      541 tcattcttct cattgggtga ctgacagcga actttgtgag atgttaccta ttagaacttg
      601 tttcagaact tccttttttt tttcttttct ccttgtagaa gaacacattt tttttttctc
      661 tcatggagca tcaacaaaga aaacattatc acatttgcta aagctattta tccccaataa
      721 aatcaagtct tgataattta tgaaaacatt cttattccat ggtatatagt cagggttgtt
      781 gagaggaaca gaagtggtag catggaagcc tatttaaatg ggatttatta tgttagctta
      841 cattaggatc tgggtagtcc atcaatgact gtctcacacc agagaggcca agaacctcag
      901 gcacatactt gtacccttca tgaggcggac agtctcggta gtagcaagcc gctgctgaag
      961 gcctcgggga gtctttgaag agcttactgg tcttcagtcc atgctggctc cctgaagaag
     1021 ctgttctgat acaaacgaag agatgcagca atggcaggaa cgagatacat gtatttgcca
     1081 ggacagagaa ggcaagcagg cagaaagcat ggttctgccc acatttactg tacacttccc
     1141 tcttgagaga taatccccca gtggaatggc cagctgcttg tcttttagtt gactccagat
     1201 cagtcaagtt gacaaccaag attaaccatc acaggaaaat gctaagtaac ttgggtttca
     1261 gataagaggc cattgcaagt tcaaatgttt tctttgccct tcatatggct aaagtagttt
     1321 caataaaatg ttctaatctt attaaggctc aaagatatgg gatgatatat atatatatat
     1381 ttgttttcct tttaatacta ggtgtgggat atggggcagc ttctgattgt ccactgcagc
     1441 tgactaggat ttgccttggg gtctagcagg ggcgtgttat tttccaattg tagatagttt
     1501 ctacgattgt gtgaggtttg gaattctggg gattcttcag agggtaaagg ttagggccct
     1561 aagaggggtg agttgttgat tgttgtgttt gataagcagt catgaacaaa caagaaacaa
     1621 gaagaagaaa ttagatgtcc caatgatgaa gatcacactt gccccaagga acatgatggc
     1681 ctttgattgg cagagtgtaa tgataacatc accgcctttc tcctctgtcc ttttttctgt
     1741 gctatctagg gggttgaagg gatggaagaa gagtgaagaa gggtggaggg aaaaag
//
