LOCUS       NM_001106282            1288 bp    mRNA    linear   ROD 04-APR-2024
DEFINITION  Rattus norvegicus mitochondrial ribosomal protein L48 (Mrpl48),
            transcript variant 2, mRNA.
ACCESSION   NM_001106282 XM_001067066 XM_215009
VERSION     NM_001106282.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1288)
  AUTHORS   Brown,A., Rathore,S., Kimanius,D., Aibara,S., Bai,X.C., Rorbach,J.,
            Amunts,A. and Ramakrishnan,V.
  TITLE     Structures of the human mitochondrial ribosome in native states of
            assembly
  JOURNAL   Nat Struct Mol Biol 24 (10), 866-869 (2017)
   PUBMED   28892042
REFERENCE   2  (bases 1 to 1288)
  AUTHORS   Brown,A., Amunts,A., Bai,X.C., Sugimoto,Y., Edwards,P.C.,
            Murshudov,G., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Structure of the large ribosomal subunit from human mitochondria
  JOURNAL   Science 346 (6210), 718-722 (2014)
   PUBMED   25278503
REFERENCE   3  (bases 1 to 1288)
  AUTHORS   Haque,M.E., Elmore,K.B., Tripathy,A., Koc,H., Koc,E.C. and
            Spremulli,L.L.
  TITLE     Properties of the C-terminal tail of human mitochondrial inner
            membrane protein Oxa1L and its interactions with mammalian
            mitochondrial ribosomes
  JOURNAL   J Biol Chem 285 (36), 28353-28362 (2010)
   PUBMED   20601428
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473956.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_215009.4, XM_001067066.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FM075525.1, FQ214311.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06621351, SAMN11044071
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
FEATURES             Location/Qualifiers
     source          1..1288
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q32"
     gene            1..1288
                     /gene="Mrpl48"
                     /note="mitochondrial ribosomal protein L48"
                     /db_xref="GeneID:293149"
                     /db_xref="RGD:1307576"
     exon            1..100
                     /gene="Mrpl48"
                     /inference="alignment:Splign:2.1.0"
     CDS             80..715
                     /gene="Mrpl48"
                     /note="isoform 2 is encoded by transcript variant 2; 39S
                     ribosomal protein L48, mitochondrial; large ribosomal
                     subunit protein mL48"
                     /codon_start=1
                     /product="large ribosomal subunit protein mL48 isoform 2"
                     /protein_id="NP_001099752.1"
                     /db_xref="GeneID:293149"
                     /db_xref="RGD:1307576"
                     /translation="MSGTLGKVLGLWTNTVSKQGFSLQRFRILGENPIYSAGGIVRTS
                     RHYKTKPTHGIGRYRHLVKVLEPKKKKAKVELRAINVGTDYEYGVLNIHLTAYDMTLA
                     ESYARYVHRLCNQLSIKVEESYAMPTKTMEVMRLPDQGNKMVLDSVLTTHERVVQISG
                     LSATFAEIFLEILQINLPEGVRLSVREHTEEDFKGRFKARPELEELLAKLN"
     exon            101..153
                     /gene="Mrpl48"
                     /inference="alignment:Splign:2.1.0"
     exon            154..191
                     /gene="Mrpl48"
                     /inference="alignment:Splign:2.1.0"
     exon            192..277
                     /gene="Mrpl48"
                     /inference="alignment:Splign:2.1.0"
     exon            278..447
                     /gene="Mrpl48"
                     /inference="alignment:Splign:2.1.0"
     exon            448..550
                     /gene="Mrpl48"
                     /inference="alignment:Splign:2.1.0"
     exon            551..640
                     /gene="Mrpl48"
                     /inference="alignment:Splign:2.1.0"
     exon            641..1288
                     /gene="Mrpl48"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggtcgcgtt ttcagaagcc taggggtcgc gattgcaagg gcggatcttc ggtttgctca
       61 gaagccgcag tggtggagaa tgagcggaac cctgggaaag gtgcttggcc tatggaccaa
      121 tactgtttct aagcaaggct tttccctcca aagattcaga attttgggag agaatcccat
      181 ttattctgca ggtggtattg tgaggaccag tcggcactac aagacaaagc ccactcatgg
      241 catcggaaga tacagacact tggtgaaagt gctagagccc aaaaagaaga aagcaaaagt
      301 agaactgaga gccatcaatg tggggacaga ttatgaatat ggggttttaa atatccacct
      361 gacagcttat gacatgactc tagcagaaag ttacgcccgg tatgtccacc gcctctgcaa
      421 ccagctgtcc atcaaagtcg aggaaagtta tgcgatgccc accaagacca tggaagtgat
      481 gcggctacca gaccaaggca acaaaatggt cctagactca gtccttacta cccatgaacg
      541 agtggtgcag atcagcggtc tgagcgctac atttgctgag attttcctgg aaatactcca
      601 aatcaatctt ccagaaggag tcagattgtc agtgagggag cacactgaag aagacttcaa
      661 gggaaggttc aaagctcggc cagaactgga agaattgttg gccaagttga actaaatgct
      721 cccttcatgg aattgttggt gtcagagaag ctcctcttgc aagatcagag ttaaggagga
      781 gcatgaatgc tcacactggg aatgccttct tgcgtctgtg acagccgtgt ttgaagttac
      841 cacttccctc aacaagacgt cgggcattct ccacctaata aacatctgct gttgccacac
      901 tgtgtgtgtg tgtgtggggt caggtatctt taaggaattc tgtttctcga aaggccctgg
      961 gttcggtccc cagctccaaa aaaaaaaaaa aaaaaaagga attctgtttc tctttgtcta
     1021 aacatcttct cattttacca tattttttta gttagagtga attcattctc taaaaatctc
     1081 tagtgtagtc tctctgtagc cttggaactt gctatataga tgagggtagc ctcaaactca
     1141 aagaaattca cctgcctcca ttccctcaat ttccaccctc cagacgctgt ggttaaatgt
     1201 gcatgccact gtgcgcaata tgaaccatct cttaaaataa tactgcagca tggaggttta
     1261 taatgaagta gaggttatat caaaggta
//
