LOCUS       NM_001037183            1955 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus mitochondrial ribosomal protein L47 (Mrpl47),
            mRNA.
ACCESSION   NM_001037183 XM_215546
VERSION     NM_001037183.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1955)
  AUTHORS   Brown,A., Rathore,S., Kimanius,D., Aibara,S., Bai,X.C., Rorbach,J.,
            Amunts,A. and Ramakrishnan,V.
  TITLE     Structures of the human mitochondrial ribosome in native states of
            assembly
  JOURNAL   Nat Struct Mol Biol 24 (10), 866-869 (2017)
   PUBMED   28892042
REFERENCE   2  (bases 1 to 1955)
  AUTHORS   Brown,A., Amunts,A., Bai,X.C., Sugimoto,Y., Edwards,P.C.,
            Murshudov,G., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Structure of the large ribosomal subunit from human mitochondria
  JOURNAL   Science 346 (6210), 718-722 (2014)
   PUBMED   25278503
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Mar 2, 2021 this sequence version replaced NM_001037183.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC105820.1, SRR26643289.6039.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-123               JAXUCZ010000002.1  117447239-117447361 c
            124-275             JAXUCZ010000002.1  117444621-117444772 c
            276-336             JAXUCZ010000002.1  117444089-117444149 c
            337-433             JAXUCZ010000002.1  117442029-117442125 c
            434-564             JAXUCZ010000002.1  117441005-117441135 c
            565-660             JAXUCZ010000002.1  117439577-117439672 c
            661-1955            JAXUCZ010000002.1  117436199-117437493 c
FEATURES             Location/Qualifiers
     source          1..1955
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q24"
     gene            1..1955
                     /gene="Mrpl47"
                     /note="mitochondrial ribosomal protein L47"
                     /db_xref="GeneID:294963"
                     /db_xref="RGD:1307531"
     exon            1..123
                     /gene="Mrpl47"
                     /inference="alignment:Splign:2.1.0"
     CDS             26..784
                     /gene="Mrpl47"
                     /note="39S ribosomal protein L47, mitochondrial"
                     /codon_start=1
                     /product="large ribosomal subunit protein uL29m"
                     /protein_id="NP_001032260.1"
                     /db_xref="GeneID:294963"
                     /db_xref="RGD:1307531"
                     /translation="MAATSLVGICRRASAFLKAACSLVNPKTPAHSGCRPPLSLLHKN
                     TPHATSFLQCKFLHTTLSRKGLEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHK
                     LWYVLLKERNMLLTLEQEAKRQRLPMPSPERLEKVVDSMDALDKVVQEREDALRLLQT
                     GQEKPRPGAWRQDIFGRIVWHKFKQWPIPWYLNKRYNRRRFFAMPYVDSFIRLRIEKH
                     ARTEARKRSLQKKKEKILQAKFPHLSQDRKSSTV"
     exon            124..275
                     /gene="Mrpl47"
                     /inference="alignment:Splign:2.1.0"
     exon            276..336
                     /gene="Mrpl47"
                     /inference="alignment:Splign:2.1.0"
     exon            337..433
                     /gene="Mrpl47"
                     /inference="alignment:Splign:2.1.0"
     exon            434..564
                     /gene="Mrpl47"
                     /inference="alignment:Splign:2.1.0"
     exon            565..660
                     /gene="Mrpl47"
                     /inference="alignment:Splign:2.1.0"
     exon            661..1955
                     /gene="Mrpl47"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcacagtgt gtctgcatta gaaacatggc tgccaccagt ctagtgggta tttgtagaag
       61 agcctcagcg ttcttaaagg ctgcttgttc cctagtaaat cccaagaccc ctgctcactc
      121 cggttgcagg cctcctctta gtttgttgca taagaacaca ccacatgcca catcttttct
      181 ccagtgtaaa tttcttcata ccacgttgtc aaggaaagga ctagaagaat tttttgatga
      241 cccaaagaat tggggggaag aaaaagtcaa atctggagct tcatggacct gccagcagct
      301 gaggaacaaa agtaacgaag acttacataa gctttggtat gtccttctga aggaaaggaa
      361 catgcttcta actctagagc aagaggccaa gcgacagaga ctgccgatgc caagtccaga
      421 gcgcttagaa aaggttgtgg attccatgga tgccttagat aaagttgtcc aggagaggga
      481 agatgcttta aggctgcttc agaccggtca agaaaagcca agacccggtg cttggagaca
      541 ggacatcttt ggaagaatcg tctggcacaa attcaagcag tggcctatac cttggtacct
      601 aaataagaga tacaaccgga ggcggttctt cgcaatgcct tacgtggata gctttatcag
      661 actgagaatt gagaaacatg cccgcactga agcaagaaag agaagcttac agaaaaagaa
      721 agaaaaaatt ctccaggcaa agttcccaca tctctctcaa gaccggaaat caagtactgt
      781 ctaaaatgag atcccgaagt ccagttccgt tgtcttaaag tctgtgtcct gatgtgaata
      841 tctgttaagc agtttataaa gaaatgttct tgtaaacatg gcatcttcat tagctctgca
      901 agtagtgttc cttataccaa aaccaagcag agttcaggtt caattccccc caaacaggtc
      961 ctgacatctg agcagcttaa tgtcacctga tatcttggtg taaatgtaat gctggttgcc
     1021 agagcaacac taacagaagt cagttcagaa atgctgttct taccagtgat gttaaactgt
     1081 gacggggagg gagctgaaga gagggctcaa tacataaggg cacttgttgc tcttccaaag
     1141 aacccagcac aaatatggta ggaagttacc gtctgtagtt ccagttgtag ggaaccaatg
     1201 ccctcctctg gcttgtacag acaccagaca ctaacgagtg tggtacagat gtacgttcag
     1261 gtgaaatacc catgcgtaat tttgtcagcg taaaaggggt gtggatcctg gtagtaaaag
     1321 tgattgcttt ccctcatcaa gtaacggtaa aagcagcact gacagcagca agtcacaaca
     1381 gaccaatcca aaccctttta ggacagtagt gatttttatt taattttgta agcctaaggt
     1441 aaaaagcata ggcagtaact tttactagtc aataaagagt aattccacca acccacagga
     1501 gagctggaaa gtacttactg aaagcaaaat atttagagaa aatagacatt catacaaaat
     1561 tataaaatgc ctgtaataag aataagtgca tctcaaggaa agcacaaact catttaattt
     1621 atagagccag ttaaagcctt aaaaaattta agtggaaatt gaaatatgca aacatgtata
     1681 aacattctac aaaagatggt catcttttcc tgagtgtcct aaagctacag acgtgaggtg
     1741 atgggcaggc agggtggagc cctcaagggc attttctttc tacacactgc ttccctcctt
     1801 cttcatattc ctgtttggaa atccacatct gttgaaaggt accctgtaag gcagaaagaa
     1861 atattacata attatgcccc agttttcatt agaaggtggt actttttact catcaatgtc
     1921 ctcaactgct atactattaa actccctcct ccaaa
//
