LOCUS       NM_001106782             671 bp    mRNA    linear   ROD 13-MAR-2024
DEFINITION  Rattus norvegicus mitochondrial ribosomal protein L42 (Mrpl42),
            mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_001106782 XM_001077569 XM_216882
VERSION     NM_001106782.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Brown,A., Rathore,S., Kimanius,D., Aibara,S., Bai,X.C., Rorbach,J.,
            Amunts,A. and Ramakrishnan,V.
  TITLE     Structures of the human mitochondrial ribosome in native states of
            assembly
  JOURNAL   Nat Struct Mol Biol 24 (10), 866-869 (2017)
   PUBMED   28892042
REFERENCE   2  (bases 1 to 671)
  AUTHORS   Brown,A., Amunts,A., Bai,X.C., Sugimoto,Y., Edwards,P.C.,
            Murshudov,G., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Structure of the large ribosomal subunit from human mitochondria
  JOURNAL   Science 346 (6210), 718-722 (2014)
   PUBMED   25278503
REFERENCE   3  (bases 1 to 671)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 671)
  AUTHORS   Cavdar Koc,E., Burkhart,W., Blackburn,K., Moseley,A. and
            Spremulli,L.L.
  TITLE     The small subunit of the mammalian mitochondrial ribosome.
            Identification of the full complement of ribosomal proteins present
  JOURNAL   J Biol Chem 276 (22), 19363-19374 (2001)
   PUBMED   11279123
REFERENCE   5  (bases 1 to 671)
  AUTHORS   Goldschmidt-Reisin,S., Kitakawa,M., Herfurth,E.,
            Wittmann-Liebold,B., Grohmann,L. and Graack,H.R.
  TITLE     Mammalian mitochondrial ribosomal proteins. N-terminal amino acid
            sequencing, characterization, and identification of corresponding
            gene sequences
  JOURNAL   J Biol Chem 273 (52), 34828-34836 (1998)
   PUBMED   9857009
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473960.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_216882.4, XM_001077569.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FM094465.1, FM077952.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760494, SAMN06621351
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q13"
     gene            1..671
                     /gene="Mrpl42"
                     /gene_synonym="Mrps32"
                     /note="mitochondrial ribosomal protein L42"
                     /db_xref="GeneID:299743"
                     /db_xref="RGD:1304915"
     exon            1..36
                     /gene="Mrpl42"
                     /gene_synonym="Mrps32"
                     /inference="alignment:Splign:2.1.0"
     exon            37..182
                     /gene="Mrpl42"
                     /gene_synonym="Mrps32"
                     /inference="alignment:Splign:2.1.0"
     CDS             116..541
                     /gene="Mrpl42"
                     /gene_synonym="Mrps32"
                     /note="Mitochondrial 28S ribosomal protein S32,
                     mitochondrial; L42mt; S32mt; MRP-L42; MRP-S32; 39S
                     ribosomal protein L42, mitochondrial; large ribosomal
                     subunit protein mL42"
                     /codon_start=1
                     /product="28S ribosomal protein L42, mitochondrial"
                     /protein_id="NP_001100252.1"
                     /db_xref="GeneID:299743"
                     /db_xref="RGD:1304915"
                     /translation="MAAAVKWAVSHRTIWRHLFPIQNGAISSARHKSTYSSLPDDYNC
                     KVELALTSDGRTIVCYHPSVDVPYEHTQPIPHPDLLHNNEETHEQILRTKLEGNRKHL
                     EQGPMIEQLSKVFFTTKHRWYPHGQYHRRRKKLNPPKDR"
     exon            183..246
                     /gene="Mrpl42"
                     /gene_synonym="Mrps32"
                     /inference="alignment:Splign:2.1.0"
     exon            247..331
                     /gene="Mrpl42"
                     /gene_synonym="Mrps32"
                     /inference="alignment:Splign:2.1.0"
     exon            332..495
                     /gene="Mrpl42"
                     /gene_synonym="Mrps32"
                     /inference="alignment:Splign:2.1.0"
     exon            496..671
                     /gene="Mrpl42"
                     /gene_synonym="Mrps32"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttaagaccca gattgaagca agatggcgag cgcgcggaac gaaaatctgt gtgcgtagaa
       61 acaggtttta gaggtagttt ctcttcacag tatcatttat tgaaatcact ggatcatggc
      121 ggcagcagtg aaatgggcgg tatcacacag aactatctgg aggcatttat ttccaatcca
      181 aaatggagcc atatctagtg ctcgtcacaa atctacgtat tcttcccttc cagacgacta
      241 caattgcaag gtagagctgg cattgacgtc tgatggcagg acaatagtgt gctaccaccc
      301 ttccgtggat gtcccctacg aacacaccca acctatccct catccagatc ttctgcataa
      361 taacgaggaa acacacgagc agatactgag aaccaagtta gaaggaaatc gcaagcatct
      421 tgagcaaggg cccatgatag aacaactcag caaggtgttc ttcaccacaa agcatcgctg
      481 gtacccacac ggacagtatc acagacgccg taagaaactg aaccctccca aagacaggtg
      541 accgactcct cttatctcag agcagcaagg acatttgctc tgcatcctgt ctgccagttg
      601 agaaaatgta cacatgtatt cattccgatg gtatgcaggg gagtaataaa aatgcccttt
      661 catggactca a
//
