LOCUS       NM_001108754            1570 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus mitochondrial ribosomal protein L4 (Mrpl4), mRNA.
ACCESSION   NM_001108754 XM_001071006 XM_343354
VERSION     NM_001108754.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1570)
  AUTHORS   Brown,A., Rathore,S., Kimanius,D., Aibara,S., Bai,X.C., Rorbach,J.,
            Amunts,A. and Ramakrishnan,V.
  TITLE     Structures of the human mitochondrial ribosome in native states of
            assembly
  JOURNAL   Nat Struct Mol Biol 24 (10), 866-869 (2017)
   PUBMED   28892042
REFERENCE   2  (bases 1 to 1570)
  AUTHORS   Brown,A., Amunts,A., Bai,X.C., Sugimoto,Y., Edwards,P.C.,
            Murshudov,G., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Structure of the large ribosomal subunit from human mitochondria
  JOURNAL   Science 346 (6210), 718-722 (2014)
   PUBMED   25278503
REFERENCE   3  (bases 1 to 1570)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   4  (bases 1 to 1570)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473993.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_343354.3, XM_001071006.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ226445.1, FQ215152.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q13"
     gene            1..1570
                     /gene="Mrpl4"
                     /note="mitochondrial ribosomal protein L4"
                     /db_xref="GeneID:363023"
                     /db_xref="RGD:1311777"
     exon            1..255
                     /gene="Mrpl4"
                     /inference="alignment:Splign:2.1.0"
     CDS             199..1083
                     /gene="Mrpl4"
                     /EC_number="3.6.5.3"
                     /note="39S ribosomal protein L4, mitochondrial"
                     /codon_start=1
                     /product="large ribosomal subunit protein uL4m"
                     /protein_id="NP_001102224.1"
                     /db_xref="GeneID:363023"
                     /db_xref="RGD:1311777"
                     /translation="MLRLFQAASRAWLRPNGSRVISSLAEDAVRPAEISEPGDSAGLL
                     DPVLRKCELPIPAPRRPVQAWVESLRGFEQERIGLAELHPDVFATTPRLDILHQVAVW
                     QRNFKRISYAKTKTRAEVSGGGRKPWQQKGSGRARHGSIRSPIWRGGGVAHGPRGPTS
                     YYYMLPMKVRALGLKVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYRHWGSSVLL
                     VDLTHEEMPKNVMAATSRLNSFNLIPAVGLNVYSMLKHQTLVLTLPSVAFLEDKLLWQ
                     DSRYTPLYPFRLPYSDFP"
     exon            256..322
                     /gene="Mrpl4"
                     /inference="alignment:Splign:2.1.0"
     exon            323..473
                     /gene="Mrpl4"
                     /inference="alignment:Splign:2.1.0"
     exon            474..525
                     /gene="Mrpl4"
                     /inference="alignment:Splign:2.1.0"
     exon            526..643
                     /gene="Mrpl4"
                     /inference="alignment:Splign:2.1.0"
     exon            644..750
                     /gene="Mrpl4"
                     /inference="alignment:Splign:2.1.0"
     exon            751..860
                     /gene="Mrpl4"
                     /inference="alignment:Splign:2.1.0"
     exon            861..937
                     /gene="Mrpl4"
                     /inference="alignment:Splign:2.1.0"
     exon            938..1570
                     /gene="Mrpl4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cttccggagc ccgctctccg ggtgttgggg cttcgggtag tcacgtggag ctgatccaaa
       61 gcctccggct tccgtacctg gggctgatgg cggccaatcg cattcgtgac gtgcgccggc
      121 gcacatacga cgtcatcagt catcgccgcg agcgtccatg ggcgcagcga cctcctgcgt
      181 gacgagattt cattcgaaat gctgcggttg ttccaggccg cttcccgggc ctggcttcga
      241 cccaatggct cccgggtcat cagctctcta gcagaagacg cggtgcggcc agccgagatt
      301 tcagagccgg gagatagcgc aggtctccta gaccctgtat tgcgcaagtg tgagcttccg
      361 ataccggcgc cccggcgccc ggtgcaagcc tgggtcgagt ctctccgagg ctttgagcag
      421 gagcgcatcg gcctggcgga gttgcacccc gacgtgtttg caacgacgcc ccggctggac
      481 attctgcacc aggttgccgt gtggcagagg aacttcaaga gaatcagcta tgctaagacc
      541 aagaccaggg cggaggtgag tggtggtggc cgcaagccct ggcagcagaa aggcagtggc
      601 cgtgcccggc acggcagcat ccgctctccc atatggcggg gaggaggtgt agcccatggt
      661 ccccggggcc ctacaagtta ctactacatg ttgcccatga aagtgcgggc actgggcctc
      721 aaggtggcct tgactgtgaa gctgatgcag gatgatctac acattgtgga ttccctggag
      781 ctacccaccg cagaccccca gtacctgaca gagttggccc agtaccgcca ctgggggagt
      841 tccgtgctcc ttgtagactt aacacatgaa gagatgccca agaatgtcat ggcagccacc
      901 tccaggctca acagtttcaa cctgatccct gcagttggcc tgaatgtgta cagcatgctc
      961 aaacaccaga ctctggtcct caccctgcct tccgtcgcct tcctggagga caagctactc
     1021 tggcaagatt caagatacac accactctac cccttccgct tgccctacag tgacttcccc
     1081 taaccctgcc ctggtcacct aggggcttgc tccactcggg ggccaggtca gcaagcacac
     1141 cagccatccc caaaaaaatc agtttcctgg agtctgtcgg accttgttac caggagggaa
     1201 aaactgcaca gagtcaaaat gatccctgcc ggggatctct tttgtcacat taaaaatgaa
     1261 ccctattttt cacaagactt ggaaatggag ctggttgctg ctgtgggatc ctgtcagctg
     1321 ttcatccagt gctgggtatt cttgatgcct ctcctccagg gctcacagcc tgcttcaata
     1381 cagactgcca ggaggagttt ctccctcctc aggcagatgt tggagcctgc atcggtgcca
     1441 agcctgtgct ttcacctcca ggagggcctc ccactgggtg ctaggcaggc tccttacagc
     1501 ttccttcagg ctcagaatca gagccaaggt cttgtgttct aggataaaac caataaaccc
     1561 atttaaagag
//
