LOCUS       NM_001398882            1090 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus mitochondrial ribosomal protein L39 (Mrpl39),
            mRNA.
ACCESSION   NM_001398882 XM_039088766
VERSION     NM_001398882.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1090)
  AUTHORS   Brown,A., Rathore,S., Kimanius,D., Aibara,S., Bai,X.C., Rorbach,J.,
            Amunts,A. and Ramakrishnan,V.
  TITLE     Structures of the human mitochondrial ribosome in native states of
            assembly
  JOURNAL   Nat Struct Mol Biol 24 (10), 866-869 (2017)
   PUBMED   28892042
REFERENCE   2  (bases 1 to 1090)
  AUTHORS   Brown,A., Amunts,A., Bai,X.C., Sugimoto,Y., Edwards,P.C.,
            Murshudov,G., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Structure of the large ribosomal subunit from human mitochondria
  JOURNAL   Science 346 (6210), 718-722 (2014)
   PUBMED   25278503
REFERENCE   3  (bases 1 to 1090)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 1090)
  AUTHORS   Mootha,V.K., Bunkenborg,J., Olsen,J.V., Hjerrild,M.,
            Wisniewski,J.R., Stahl,E., Bolouri,M.S., Ray,H.N., Sihag,S.,
            Kamal,M., Patterson,N., Lander,E.S. and Mann,M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000011.1.
            
            On Dec 27, 2021 this sequence version replaced XM_039088766.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ225027.1, FQ230552.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-90                JAXUCZ010000011.1  37281455-37281544   c
            91-297              JAXUCZ010000011.1  37280706-37280912   c
            298-437             JAXUCZ010000011.1  37278633-37278772   c
            438-537             JAXUCZ010000011.1  37277227-37277326   c
            538-605             JAXUCZ010000011.1  37276795-37276862   c
            606-718             JAXUCZ010000011.1  37274328-37274440   c
            719-784             JAXUCZ010000011.1  37272047-37272112   c
            785-938             JAXUCZ010000011.1  37270979-37271132   c
            939-986             JAXUCZ010000011.1  37267207-37267254   c
            987-1090            JAXUCZ010000011.1  37266116-37266219   c
FEATURES             Location/Qualifiers
     source          1..1090
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q11"
     gene            1..1090
                     /gene="Mrpl39"
                     /note="mitochondrial ribosomal protein L39"
                     /db_xref="GeneID:684304"
                     /db_xref="RGD:1591507"
     exon            1..90
                     /gene="Mrpl39"
                     /inference="alignment:Splign:2.1.0"
     CDS             27..1037
                     /gene="Mrpl39"
                     /note="39S ribosomal protein L39, mitochondrial"
                     /codon_start=1
                     /product="large ribosomal subunit protein mL39"
                     /protein_id="NP_001385811.1"
                     /db_xref="GeneID:684304"
                     /db_xref="RGD:1591507"
                     /translation="MATTVGRVALRRPCMGGRARWRFIATSPAAELSPAELTEMRNDL
                     FNKEKSRQLSLTPRTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSEWYCKKSIL
                     ALVDGQPWDMYKPLTKSCEIKFLTFKDPDPREVNKAYWRSCAMMMGCVLERAFKDDYV
                     VSLVRVPDVPVIAGAFCYDVALDKRLDEWMPTKENLRSFTKDAHTLIYRDLPFETLEV
                     DAKVALEIFQHNKYKVDFIEEKASQNPERIVKLHRIGDFIDVSEGPLIPRTSVCFQYE
                     VSAVHNLPRSQPSLVRRFQGLSLPIHLRAQFTIWDKLLERSRKMVTEDEITQTESTAP
                     TQ"
     exon            91..297
                     /gene="Mrpl39"
                     /inference="alignment:Splign:2.1.0"
     exon            298..437
                     /gene="Mrpl39"
                     /inference="alignment:Splign:2.1.0"
     exon            438..537
                     /gene="Mrpl39"
                     /inference="alignment:Splign:2.1.0"
     exon            538..605
                     /gene="Mrpl39"
                     /inference="alignment:Splign:2.1.0"
     exon            606..718
                     /gene="Mrpl39"
                     /inference="alignment:Splign:2.1.0"
     exon            719..784
                     /gene="Mrpl39"
                     /inference="alignment:Splign:2.1.0"
     exon            785..938
                     /gene="Mrpl39"
                     /inference="alignment:Splign:2.1.0"
     exon            939..986
                     /gene="Mrpl39"
                     /inference="alignment:Splign:2.1.0"
     exon            987..1090
                     /gene="Mrpl39"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaactccctt ggttgcctcg gaagctatgg ctaccacagt gggaagggtg gcccttcggc
       61 gcccctgcat gggcggcaga gcccgctggc gatttatagc gacatcgcca gctgccgagc
      121 tgtcacccgc ggaactgaca gaaatgcgga atgatctgtt taataaagag aagagtaggc
      181 agttatcgtt aactccacga acagagaaga tcgaagttaa gcatgttggg aaaactgatc
      241 ctggcactgt cttcgtgatg aataaaaaca tttcaactcc ctacagttgt gccatgcatt
      301 tgagtgagtg gtactgtaag aagtccatcc tggctcttgt ggacggacag ccatgggaca
      361 tgtataaacc tctgaccaag tcttgtgaga ttaaatttct tactttcaaa gaccctgatc
      421 caagagaagt gaataaggcg tattggcgtt cttgtgccat gatgatgggc tgtgtactag
      481 aaagggcatt caaagatgac tacgtggtca gcttggtcag agtacctgac gttcctgtga
      541 ttgctggggc cttctgctat gatgtcgctt tggataagag actggatgag tggatgccaa
      601 ccaaagagaa cctacgttct ttcacaaaag atgcccatac tttaatatat agggaccttc
      661 cctttgaaac tctggaagtt gatgcaaaag tggcattaga aatatttcaa cataacaagt
      721 acaaagtgga cttcatagag gagaaggcat ctcagaatcc tgagagaata gtcaagttac
      781 acagaatcgg tgacttcatt gatgtgagtg aaggccctct tattccgaga acaagtgttt
      841 gtttccagta tgaagtgtca gcggtccaca atcttccccg cagccagccc agcctggtgc
      901 gcagatttca gggcctctcg ctacccattc acttgagagc acagtttaca atctgggaca
      961 agctattgga aagatcacgg aaaatggtaa ccgaagatga aatcacacag acggagagca
     1021 ccgcacccac ccagtagtgt ccgaaaattt aaatatgtat agtaaattaa aataaaagct
     1081 tttaatacaa
//
