LOCUS       NM_001313842             998 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus mitochondrial ribosomal protein L17 (Mrpl17),
            transcript variant 1, mRNA.
ACCESSION   NM_001313842
VERSION     NM_001313842.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 998)
  AUTHORS   Brown,A., Rathore,S., Kimanius,D., Aibara,S., Bai,X.C., Rorbach,J.,
            Amunts,A. and Ramakrishnan,V.
  TITLE     Structures of the human mitochondrial ribosome in native states of
            assembly
  JOURNAL   Nat Struct Mol Biol 24 (10), 866-869 (2017)
   PUBMED   28892042
REFERENCE   2  (bases 1 to 998)
  AUTHORS   Brown,A., Amunts,A., Bai,X.C., Sugimoto,Y., Edwards,P.C.,
            Murshudov,G., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Structure of the large ribosomal subunit from human mitochondria
  JOURNAL   Science 346 (6210), 718-722 (2014)
   PUBMED   25278503
REFERENCE   3  (bases 1 to 998)
  AUTHORS   Da Cruz,S., Xenarios,I., Langridge,J., Vilbois,F., Parone,P.A. and
            Martinou,J.C.
  TITLE     Proteomic analysis of the mouse liver mitochondrial inner membrane
  JOURNAL   J Biol Chem 278 (42), 41566-41571 (2003)
   PUBMED   12865426
REFERENCE   4  (bases 1 to 998)
  AUTHORS   Tchernev,V.T., Mansfield,T.A., Giot,L., Kumar,A.M., Nandabalan,K.,
            Li,Y., Mishra,V.S., Detter,J.C., Rothberg,J.M., Wallace,M.R.,
            Southwick,F.S. and Kingsmore,S.F.
  TITLE     The Chediak-Higashi protein interacts with SNARE complex and signal
            transduction proteins
  JOURNAL   Mol Med 8 (1), 56-64 (2002)
   PUBMED   11984006
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1, FM126647.1 and FM050943.1.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1). Both variants 1 and 2 encode the same protein (isoform 1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BQ200775.1, BC058447.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840107, SAMN12840111
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-80                JAXUCZ010000001.1  169575620-169575699 c
            81-577              FM126647.1         1-497
            578-631             JAXUCZ010000001.1  169574010-169574063 c
            632-764             FM126647.1         499-631
            765-997             FM050943.1         333-565
            998-1051            JAXUCZ010000001.1  169574010-169574063 c
FEATURES             Location/Qualifiers
     source          1..998
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q32"
     gene            1..998
                     /gene="Mrpl17"
                     /gene_synonym="L17mt; MRP-L17"
                     /note="mitochondrial ribosomal protein L17"
                     /db_xref="GeneID:171061"
                     /db_xref="RGD:70943"
     exon            1..261
                     /gene="Mrpl17"
                     /gene_synonym="L17mt; MRP-L17"
                     /inference="alignment:Splign:2.1.0"
     CDS             88..618
                     /gene="Mrpl17"
                     /gene_synonym="L17mt; MRP-L17"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; 39S ribosomal protein L17, mitochondrial;
                     Na++/Ca++ exchanger-associated protein; large ribosomal
                     subunit protein bL17m"
                     /codon_start=1
                     /product="large ribosomal subunit protein bL17m isoform 1
                     precursor"
                     /protein_id="NP_001300771.1"
                     /db_xref="GeneID:171061"
                     /db_xref="RGD:70943"
                     /translation="MRLSLAAAISHGRVYRRLGLGPESRIHLLRNLLTGLVRHERIEA
                     TWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFKVLAPRFQGQNG
                     NYTRMLQIPNRKEQDRAKMAVIEYKGNCLPPLPLPHRDSNLTLLNQLLLGLQQDLHHN
                     QKASLHSSHTVQTPKT"
     exon            262..330
                     /gene="Mrpl17"
                     /gene_synonym="L17mt; MRP-L17"
                     /inference="alignment:Splign:2.1.0"
     exon            331..639
                     /gene="Mrpl17"
                     /gene_synonym="L17mt; MRP-L17"
                     /inference="alignment:Splign:2.1.0"
     exon            640..998
                     /gene="Mrpl17"
                     /gene_synonym="L17mt; MRP-L17"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaagtgactc cgccctgcac ccccgcaaca cacaccgtgc ttagtttcct tttccgggcc
       61 ccggagaggt ggggccaagg tgggagcatg aggttgtctt tagctgccgc tatctcccac
      121 ggccgcgtct accgccgcct gggcctcggt cccgagtccc ggatccacct tctacggaac
      181 ttgctcacag gcctagttcg ccacgaacgc atcgaggcga catgggcacg cgtggacgag
      241 atgaggggct acgcggagaa gctcatcgac tatggaaagc tgggagacac caacgaacga
      301 gccatgcgta tggctgactt ctggctcact gagaaggact tgatcccaaa gctgtttaaa
      361 gtgctagcgc ctcggttcca aggtcagaat ggcaactaca caagaatgct acagatcccg
      421 aatcgaaagg aacaagatcg ggccaagatg gcagtgatag aatataaggg gaactgcctc
      481 cctcccctgc ctctgcctca cagagatagc aaccttactc tcctaaacca gctactcctg
      541 ggactgcagc aggacctgca ccataaccag aaagcaagcc tccacagctc ccatacagtt
      601 caaacaccaa agacttaact ggagctggag agtgcatagg atttctggaa cataaggaac
      661 atgcagatgc tcagcctcct acgacagtaa atccactgct ttacctttct gagtcttagg
      721 tccagttttg ctttgctttt tggtggggag agggtcttgc tgtgtaatcc aggttgcatc
      781 taccatgcag cagtcctcct gtcccttttg cccaagtgct gggcttgaag gtgttcacca
      841 ccacacagtg ccagtttgct tatgttttgt ttatattttt ctgagacaga gtttctttgg
      901 ctgtcctgga actctctttg tagaccatgc tggacttgaa ctaagaaatc cacatgcatt
      961 tgcctcctga gtactgggat taaaggcatg ggacacca
//
