LOCUS       NM_001006985             790 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus mitochondrial ribosomal protein L13 (Mrpl13),
            mRNA.
ACCESSION   NM_001006985 XM_216933
VERSION     NM_001006985.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Brown,A., Rathore,S., Kimanius,D., Aibara,S., Bai,X.C., Rorbach,J.,
            Amunts,A. and Ramakrishnan,V.
  TITLE     Structures of the human mitochondrial ribosome in native states of
            assembly
  JOURNAL   Nat Struct Mol Biol 24 (10), 866-869 (2017)
   PUBMED   28892042
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Brown,A., Amunts,A., Bai,X.C., Sugimoto,Y., Edwards,P.C.,
            Murshudov,G., Scheres,S.H.W. and Ramakrishnan,V.
  TITLE     Structure of the large ribosomal subunit from human mitochondria
  JOURNAL   Science 346 (6210), 718-722 (2014)
   PUBMED   25278503
REFERENCE   3  (bases 1 to 790)
  AUTHORS   Bogenhagen,D.F., Martin,D.W. and Koller,A.
  TITLE     Initial steps in RNA processing and ribosome assembly occur at
            mitochondrial DNA nucleoids
  JOURNAL   Cell Metab 19 (4), 618-629 (2014)
   PUBMED   24703694
REFERENCE   4  (bases 1 to 790)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   5  (bases 1 to 790)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   6  (bases 1 to 790)
  AUTHORS   Camara,Y., Asin-Cayuela,J., Park,C.B., Metodiev,M.D., Shi,Y.,
            Ruzzenente,B., Kukat,C., Habermann,B., Wibom,R., Hultenby,K.,
            Franz,T., Erdjument-Bromage,H., Tempst,P., Hallberg,B.M.,
            Gustafsson,C.M. and Larsson,N.G.
  TITLE     MTERF4 regulates translation by targeting the methyltransferase
            NSUN4 to the mammalian mitochondrial ribosome
  JOURNAL   Cell Metab 13 (5), 527-539 (2011)
   PUBMED   21531335
REFERENCE   7  (bases 1 to 790)
  AUTHORS   Haque,M.E., Elmore,K.B., Tripathy,A., Koc,H., Koc,E.C. and
            Spremulli,L.L.
  TITLE     Properties of the C-terminal tail of human mitochondrial inner
            membrane protein Oxa1L and its interactions with mammalian
            mitochondrial ribosomes
  JOURNAL   J Biol Chem 285 (36), 28353-28362 (2010)
   PUBMED   20601428
REFERENCE   8  (bases 1 to 790)
  AUTHORS   Girard,A., Sachidanandam,R., Hannon,G.J. and Carmell,M.A.
  TITLE     A germline-specific class of small RNAs binds mammalian Piwi
            proteins
  JOURNAL   Nature 442 (7099), 199-202 (2006)
   PUBMED   16751776
REFERENCE   9  (bases 1 to 790)
  AUTHORS   Kenmochi,N., Suzuki,T., Uechi,T., Magoori,M., Kuniba,M., Higa,S.,
            Watanabe,K. and Tanaka,T.
  TITLE     The human mitochondrial ribosomal protein genes: mapping of 54
            genes to the chromosomes and implications for human disorders
  JOURNAL   Genomics 77 (1-2), 65-70 (2001)
   PUBMED   11543634
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC084710.1.
            
            On Nov 22, 2004 this sequence version replaced XM_216933.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC084710.1, CF977217.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760494
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q32"
     gene            1..790
                     /gene="Mrpl13"
                     /note="mitochondrial ribosomal protein L13"
                     /db_xref="GeneID:299938"
                     /db_xref="RGD:1359587"
     exon            1..29
                     /gene="Mrpl13"
                     /inference="alignment:Splign:2.1.0"
     CDS             3..539
                     /gene="Mrpl13"
                     /EC_number="3.6.5.3"
                     /note="39S ribosomal protein L13, mitochondrial"
                     /codon_start=1
                     /product="large ribosomal subunit protein uL13m"
                     /protein_id="NP_001006986.1"
                     /db_xref="GeneID:299938"
                     /db_xref="RGD:1359587"
                     /translation="MSSFSKAPQQWATFARMWYLLDGKMQPPGKLAAIASNKLQGLHK
                     PVYHQLSDCGDHVVIINTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHLKDPVA
                     IVKLATYGMLPKNLHRRTMMQRLHLFPDEDIPEDILKNLVEELPQPRRVPKRLDEYTQ
                     EEIEAFPRVWAPPDDFRI"
     exon            30..153
                     /gene="Mrpl13"
                     /inference="alignment:Splign:2.1.0"
     exon            154..247
                     /gene="Mrpl13"
                     /inference="alignment:Splign:2.1.0"
     exon            248..308
                     /gene="Mrpl13"
                     /inference="alignment:Splign:2.1.0"
     exon            309..395
                     /gene="Mrpl13"
                     /inference="alignment:Splign:2.1.0"
     exon            396..517
                     /gene="Mrpl13"
                     /inference="alignment:Splign:2.1.0"
     exon            518..766
                     /gene="Mrpl13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcatgtctag cttctcaaag gcgccccagc aatgggccac ttttgctcga atgtggtatc
       61 tcttggatgg caaaatgcag ccccctggca aacttgcggc catagcatcc aataaacttc
      121 aggggttaca taaaccagtg taccatcagc tgagtgattg tggagaccat gttgtcataa
      181 taaacacaag acatattgca ttttctggaa acaaatggga acaaaaagtg tactcctcac
      241 atactggcta cccgggtggc ttcagacagg taacagctgc acagctccac ctgaaagacc
      301 cagtggcgat tgtgaagtta gctacttatg gcatgctgcc caaaaacctg cacagaagaa
      361 cgatgatgca aaggctgcat ctttttcctg atgaggatat tccagaagat attcttaaga
      421 atttagtgga agagcttcct cagccacgga gagtgcctaa gcggctggac gagtacaccc
      481 aagaagaaat agaggctttc ccgagagtgt gggccccacc tgatgatttt cggatatagg
      541 agaatggaag tggtggaaaa ttacagcaag agaatgaatg ctcatgaagt attcctgtga
      601 cctagggcag agagagaaca cgggagctca ctgtggagaa cactcaagaa ggccaggcct
      661 cagtgggaaa gtgcagtaga acattctatt ttacagaagt gtcttgtgta gcctggtact
      721 ggtttaaatg ctataaatgt taataaaatg cttatttggt tatgtaaaaa aaaaaaaaaa
      781 aaaaaaaaaa
//
