LOCUS       NM_001170554            4255 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus M-phase phosphoprotein 9 (Mphosph9), mRNA.
ACCESSION   NM_001170554
VERSION     NM_001170554.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4255)
  AUTHORS   Wang,W.J., Tay,H.G., Soni,R., Perumal,G.S., Goll,M.G.,
            Macaluso,F.P., Asara,J.M., Amack,J.D. and Tsou,M.F.
  TITLE     CEP162 is an axoneme-recognition protein promoting ciliary
            transition zone assembly at the cilia base
  JOURNAL   Nat Cell Biol 15 (6), 591-601 (2013)
   PUBMED   23644468
REFERENCE   2  (bases 1 to 4255)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   3  (bases 1 to 4255)
  AUTHORS   De Jager,P.L., Chibnik,L.B., Cui,J., Reischl,J., Lehr,S.,
            Simon,K.C., Aubin,C., Bauer,D., Heubach,J.F., Sandbrink,R.,
            Tyblova,M., Lelkova,P., Havrdova,E., Pohl,C., Horakova,D.,
            Ascherio,A., Hafler,D.A. and Karlson,E.W.
  CONSRTM   Steering committee of the BENEFIT study; Steering committee of the
            BEYOND study; Steering committee of the LTF study; Steering
            committee of the CCR1 study
  TITLE     Integration of genetic risk factors into a clinical algorithm for
            multiple sclerosis susceptibility: a weighted genetic risk score
  JOURNAL   Lancet Neurol 8 (12), 1111-1119 (2009)
   PUBMED   19879194
REFERENCE   4  (bases 1 to 4255)
  AUTHORS   Matsumoto-Taniura,N., Pirollet,F., Monroe,R., Gerace,L. and
            Westendorf,J.M.
  TITLE     Identification of novel M phase phosphoproteins by expression
            cloning
  JOURNAL   Mol Biol Cell 7 (9), 1455-1469 (1996)
   PUBMED   8885239
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760383, SAMEA5760389
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-195               JAXUCZ010000012.1  37936885-37937079
            196-459             JAXUCZ010000012.1  37938850-37939113
            460-613             JAXUCZ010000012.1  37942524-37942677
            614-703             JAXUCZ010000012.1  37948041-37948130
            704-1224            JAXUCZ010000012.1  37948304-37948824
            1225-1354           JAXUCZ010000012.1  37951516-37951645
            1355-1448           JAXUCZ010000012.1  37957997-37958090
            1449-1552           JAXUCZ010000012.1  37960465-37960568
            1553-2007           JAXUCZ010000012.1  37964893-37965347
            2008-2163           JAXUCZ010000012.1  37966274-37966429
            2164-2251           JAXUCZ010000012.1  37970446-37970533
            2252-2467           JAXUCZ010000012.1  37971715-37971930
            2468-2515           JAXUCZ010000012.1  37975492-37975539
            2516-2580           JAXUCZ010000012.1  37976509-37976573
            2581-2682           JAXUCZ010000012.1  37978277-37978378
            2683-2817           JAXUCZ010000012.1  37990227-37990361
            2818-2996           JAXUCZ010000012.1  37991825-37992003
            2997-3143           JAXUCZ010000012.1  37993960-37994106
            3144-3264           JAXUCZ010000012.1  37995381-37995501
            3265-3362           JAXUCZ010000012.1  37996440-37996537
            3363-3595           JAXUCZ010000012.1  37997340-37997572
            3596-3664           JAXUCZ010000012.1  37998630-37998698
            3665-4255           JAXUCZ010000012.1  38002758-38003348
FEATURES             Location/Qualifiers
     source          1..4255
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q15"
     gene            1..4255
                     /gene="Mphosph9"
                     /note="M-phase phosphoprotein 9"
                     /db_xref="GeneID:288654"
                     /db_xref="RGD:1598368"
     exon            1..195
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
     exon            196..459
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
     CDS             353..3766
                     /gene="Mphosph9"
                     /codon_start=1
                     /product="M-phase phosphoprotein 9"
                     /protein_id="NP_001164025.1"
                     /db_xref="GeneID:288654"
                     /db_xref="RGD:1598368"
                     /translation="MEDFDLVETLQKTSPSVESDVKSTPHSLGLSSHANRSSPHLSTN
                     GVSSFSGKTGPPVIQGTVEVLTALRQDLQNSGRTDAELWKNCEARWLQLFSVIEQHFQ
                     EQVVTQQEQFHRQIQRIQEEIRKLVKLQASNASWPSCSSSVSEQVSSESQMGFFSENS
                     ERNESVASYPASKEPETQPASSTSHPDCNVDSSSLSSGYGTFCLLEMNTHKAKEPTEP
                     LEPEAASQGQHTATAVQAQAHAGGTAAINFFTQTPEELCASLKEDVSIFPGEFEHNFL
                     GENKISEVYSGKANSKALTSWAQKLKQNQPKQAHAEDDCSRPKPATGSELTWKPPVDT
                     SNLPADAARPCAFYLNKPAESPSSWSSDSGTGLTYWKLEEKDMYHSLPETLEKTFAPS
                     PAERPLSQVLTLDPATHRKPKEQAASIHPHSFLNTLDDRISFSPDSVLEPSLSSHSDI
                     DSFSQASHNASQVSGFPKYPSTTKASPVDTWKSHAFQSESRTSSTIPSRYTITSNDIS
                     VKTIDEENTVTVASVSQSQLPGTANSVPECISLASLEDPVMLSKIRQNLKEKHARHVA
                     DLRAYYESEISALRQKLEAKDISAVEEWKKKNEALVDRCGQLDSALTEATSRVRTLEK
                     KNNLLEIEVSDLRERFNAASSASKILQERIEEMRTSNKEKDNTITRLKCRLQDLEEAF
                     ENAYKLSDDKEARLRQENKMFQDLLGEYESLGKEHGRVKDTLNMTENKLLDAHTQISD
                     LKRMISKLEAQVKQAEHESMLSLRHSAKAPTRPSRANTLATSDVSRRKWLIPGAEYSI
                     FTGQPLDSRDKQTDRQLQETGVPGYHSPPEKDSSLGKSPASLLIKKKRDAPDTPPIIK
                     ALKELDEERLFKNWGTQTEKEDSSSKLVNPRQTEPSVNTGRSPEKCAQQRPKRQSSAS
                     QRSSSLPPSNRKANTPTKREIMLTPVTVAYSPKRSPKENLSPGFSHLLSKNENSPVRF
                     DILLDDLDTVPVSTLQQTSPRKQLQFLDDMEEKTSDDPVNPSSCPEHSANGLKKVSTK
                     QAWEKSKSLSLEQCKPASAASQDNDFEYTAKIRTLAETERFFDELTKEKDQIEAALSR
                     MPSPGGRITLQTRLNQEALEDRLEKINRELGSVRMTLKKFHVLRSSANL"
     exon            460..613
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
     exon            614..703
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
     exon            704..1224
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
     exon            1225..1354
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
     exon            1355..1448
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
     exon            1449..1552
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
     exon            1553..2007
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
     exon            2008..2163
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
     exon            2164..2251
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
     exon            2252..2467
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
     exon            2468..2515
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
     exon            2516..2580
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
     exon            2581..2682
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
     exon            2683..2817
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
     exon            2818..2996
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
     exon            2997..3143
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
     exon            3144..3264
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
     exon            3265..3362
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
     exon            3363..3595
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
     exon            3596..3664
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
     exon            3665..4255
                     /gene="Mphosph9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcagtggtcg tgagtgattc tccatcatcc tgtgatctct cgcttggacc agtattcgct
       61 agcatctggc ttcaataact gaaaccatct catgcgggtt cctttcagcc tctccgcaaa
      121 gaggaagcac agtgaacttt aaaattgtta gcgcaactcc atcactttct gcctccagct
      181 ccagtgggtt gtaggactcg ttgaatcgat agccggtttc actgttctga atgtcagctg
      241 ctgaggatgc cggtagaaga tgaagcgact gaagaggacc ccgaagcagt ctcctcccaa
      301 aggagaagca acagtatttc taaatgacag agcttgacaa tttttgtacg atatggagga
      361 ttttgatctg gtggaaactt tacaaaaaac gtcaccttct gtagaatctg atgtcaaaag
      421 tactccccat tctcttgggt tgagctcaca tgctaataga agtagtcccc accttagtac
      481 aaatggggta tcctctttct cagggaagac cgggccacct gtcattcaag gcacagtcga
      541 agtcctcact gctttaagac aagacctaca gaacagtggc cggactgacg cggaactttg
      601 gaagaactgt gaggccaggt ggttgcagct cttcagtgtg attgaacagc atttccagga
      661 gcaggtcgtg acccagcagg agcagttcca tcggcagatc cagcggatac aggaggagat
      721 acggaagttg gtgaaactcc aggccagcaa tgcttcctgg ccatcctgca gcagctctgt
      781 gagcgaacag gtgtcctcag aaagccaaat gggcttcttt tctgaaaaca gcgagagaaa
      841 tgagtctgtg gccagttacc cagcgtctaa ggaacccgag acccagccag catcgtccac
      901 atcccaccca gattgcaatg tggacagcag ctcactgagt agtggctacg ggactttctg
      961 cctcctggag atgaacaccc acaaggctaa ggagcccacg gagcccttgg agcctgaggc
     1021 agcttcccag gggcagcaca cagccactgc agtgcaggca caagcccatg caggaggcac
     1081 agcagccatc aacttcttca cacagacccc tgaggagctt tgtgcgtctc taaaggaaga
     1141 tgtctccatt tttcctggtg aattcgaaca taattttctt ggcgaaaaca agatctctga
     1201 agtatacagt ggaaaagcaa atagtaaggc tctaacatcc tgggcacaaa agctgaagca
     1261 gaaccagcca aagcaagcac atgcagaaga cgactgctcc agacctaagc cagcgacagg
     1321 gagcgagcta acctggaagc ctccagttga tacatctaac cttcctgccg acgctgcacg
     1381 tccttgtgcc ttttacctca ataagccagc cgaaagccca agttcttggt cgtctgattc
     1441 agggacaggg ctgacttact ggaagctgga ggagaaggac atgtatcact ctttgcccga
     1501 aacattggag aagacatttg caccatctcc tgcagagagg ccactgagcc aggtcctgac
     1561 tctggatccg gccacacaca ggaagccaaa ggagcaggct gccagcatcc atccccatag
     1621 ctttttgaat actctcgatg acagaatatc cttttcccca gactccgttc tggaaccaag
     1681 cctgtctagt cactctgaca ttgactcgtt ttcacaagca agtcataatg cttctcaggt
     1741 atctgggttc cccaaatatc cgtcaactac gaaagcatcg cctgtggaca cttggaaaag
     1801 ccatgcattc caaagtgaaa gtaggaccag ttccacgatc ccttcacgct acaccatcac
     1861 tagcaacgat atctcagtca aaactataga cgaagaaaac actgtcacag tggcctcagt
     1921 cagtcagtcc cagcttccag gtacagccaa cagtgtccca gaatgcattt cattggcttc
     1981 cctggaagat cctgtgatgt tgtctaagat caggcagaac ctcaaggaaa agcacgcacg
     2041 acacgtagcc gaccttcgag cttattatga gtcggagata agtgctctga gacagaaact
     2101 ggaggccaaa gacatttctg ctgtcgaaga gtggaagaag aaaaatgaag ctcttgtgga
     2161 cagatgtggc cagctggata gtgcactgac tgaagctact agtcgagtgc gaacccttga
     2221 aaagaagaac aatttgctag aaatagaagt gagtgacttg agagaacgct tcaatgcagc
     2281 cagcagtgcc tccaaaattt tgcaggaacg aattgaagag atgaggacaa gcaataaaga
     2341 gaaagacaac accatcacgc ggctaaagtg ccggctgcag gatctagaag aagcctttga
     2401 gaatgcttac aagctctcag atgataaaga agcccggctg agacaagaaa acaaaatgtt
     2461 tcaagatctc ttaggagagt atgagtccct cggcaaagag catgggcgag taaaggatac
     2521 attaaacatg accgagaaca aactgcttga cgcacatact cagatttctg acttgaaaag
     2581 gatgatctca aaacttgaag ctcaggtgaa gcaggcggag cacgagagta tgctgagtct
     2641 tcgccacagc gctaaagctc ccacgaggcc atcccgggcc aacacactag ccacctcgga
     2701 tgtcagcagg aggaagtggc tgatcccggg agcagagtac tccatcttca ctgggcagcc
     2761 tctggacagc agggacaagc agacagacag acagctgcag gaaaccggtg ttcctggata
     2821 ccattctcct ccagaaaagg actcttcact tggaaagtca ccagcaagct tattgattaa
     2881 aaagaagagg gacgcaccag acactccacc aatcattaag gctttaaagg aacttgatga
     2941 agaaagactg tttaaaaatt gggggacaca gacagagaaa gaggactcct caagtaaatt
     3001 agtgaatcct cggcagactg aaccttcagt caatacaggc cgttccccag agaaatgtgc
     3061 ccagcagaga ccaaagagac agagttcagc ttcacagagg tcatcgtctc tcccaccttc
     3121 caatcggaaa gccaacactc caacaaaaag agagattatg ttgacgccag tgaccgtggc
     3181 ttatagtcct aagcggtccc ctaaagaaaa tttgtcccca ggatttagtc atctccttag
     3241 caaaaatgaa aacagtccag ttcgatttga tatccttttg gatgatttag atactgttcc
     3301 tgtgtccacg ttacaacaaa ccagtccacg gaagcagctc cagtttcttg atgacatgga
     3361 agaaaaaacc agtgatgacc ctgttaatcc tagctcttgt cctgaacact cagcaaatgg
     3421 cttgaagaaa gtgtccacga aacaagcctg ggagaagagt aaatcactta gccttgagca
     3481 gtgcaagccg gcatcagcag catcacagga taacgatttt gaatataccg caaagattag
     3541 gaccctagct gaaacggagc ggttttttga tgaacttaca aaagaaaaag accagatcga
     3601 ggcagcacta agccgaatgc catctcctgg aggaagaatc actttacaaa caagactaaa
     3661 tcaggaggcc ttggaagatc gtttggaaaa gatcaatcgt gaactgggtt cagttcgaat
     3721 gacactcaag aagtttcatg ttttgcgaag ctctgcaaat ctctgagact ggtagccatt
     3781 aaacttgaga catttttgtt tgcactaatg tacaattatg cactcggaaa aggcaagctc
     3841 ttttctactg tttataagcc ttcaaacagt agttttacaa tcatgctatt cttacacctg
     3901 ctattttata cttaaaatgg ccacatattt tcaagatatt tttgttatgc tcaggaacct
     3961 cttgtatatt ttactattta aaaagcatta tttttaaata gcctatgtgt ccaatttcta
     4021 tcaacaatac ggaaatgtaa atggggaggc agcttgtttc taaagaaata gtgttatcct
     4081 tttacaatga actttgcaca ctgattttat aaacttgttc tacattgtaa atataattca
     4141 tttttaaaat aaatgcttag tagcttccat aaggatagac taatatgcta aatatttaaa
     4201 atattatagt acagtttgca tttaggctct gtagaagttt ttaagacaag ataac
//
