LOCUS       NM_001399113            3368 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus MON1 homolog B, secretory trafficking associated
            (Mon1b), transcript variant 1, mRNA.
ACCESSION   NM_001399113 XM_039097772
VERSION     NM_001399113.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3368)
  AUTHORS   Vaites,L.P., Paulo,J.A., Huttlin,E.L. and Harper,J.W.
  TITLE     Systematic Analysis of Human Cells Lacking ATG8 Proteins Uncovers
            Roles for GABARAPs and the CCZ1/MON1 Regulator C18orf8/RMC1 in
            Macroautophagic and Selective Autophagic Flux
  JOURNAL   Mol Cell Biol 38 (1), e00392-17 (2017)
   PUBMED   29038162
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3368)
  AUTHORS   Wu,W., Yu,X., Li,W., Guo,L., Liu,L., Wang,L. and Li,Q.
  TITLE     HSV-1 stimulation-related protein HSRG1 inhibits viral gene
            transcriptional elongation by interacting with Cyclin T2
  JOURNAL   Sci China Life Sci 54 (4), 359-365 (2011)
   PUBMED   21509660
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On Jan 4, 2022 this sequence version replaced XM_039097772.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.378695.1,
                                           SRR26360190.1563898.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-449               JAXUCZ010000019.1  58526734-58527182
            450-884             JAXUCZ010000019.1  58528678-58529112
            885-1704            JAXUCZ010000019.1  58529605-58530424
            1705-1852           JAXUCZ010000019.1  58530757-58530904
            1853-3368           JAXUCZ010000019.1  58532963-58534478
FEATURES             Location/Qualifiers
     source          1..3368
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..3368
                     /gene="Mon1b"
                     /gene_synonym="RGD1309977"
                     /note="MON1 homolog B, secretory trafficking associated"
                     /db_xref="GeneID:307868"
                     /db_xref="RGD:1309977"
     exon            1..449
                     /gene="Mon1b"
                     /gene_synonym="RGD1309977"
                     /inference="alignment:Splign:2.1.0"
     CDS             302..2053
                     /gene="Mon1b"
                     /gene_synonym="RGD1309977"
                     /note="MON1 secretory trafficking family member B"
                     /codon_start=1
                     /product="vacuolar fusion protein MON1 homolog B"
                     /protein_id="NP_001386042.1"
                     /db_xref="GeneID:307868"
                     /db_xref="RGD:1309977"
                     /translation="METGGDNAVPAPGGVEDLVDTQFPREEAGDSEEVHSSTLDPGDG
                     EPEDTGSKTKDQPSSLLSPLPQAEAPSSTCEHWKTAASDSSPTGEPQRSSEGQGEDPS
                     DGDPNDGDPSDGDPNDGDPNDGDPSDGDPNDGDPSDEDWRSQRKHVFVLSEAGKPIYS
                     RYGSVEALSATMGVMTALVSFVQSAGDAIRAIYAEDHKLVFLQQGPLLLVAVSRTPQS
                     AAQLRGELLAVHAQIVSTLTRASVARIFAHKQNYDLRRLLAGSERTLDRLLDSVEQDP
                     GALLLGAVRCVPLARPLRDALGTLLRRCTAPGLALSVLAVGGRLITAAQERNVLAECR
                     LDPADLQLLLDWVGAPAFAAGEAWAPVCLPRFNPDGFFYAYVARLDSMPVCLLLLGTN
                     REAFHAMAACRRLVEDGMHNLGALRTLGEAASFSNGPAANAPAYSVQAVGAPGLRHFL
                     YKPLDIPEQHRQLPQFTSPELEAPYSREEERQRLSDLYHRLHARLHSTSRPLRLIYHV
                     AEKETLLAWVTSKFELYTCLSPLVTKAAAILVVTKLLRWVRKEEDRLFIRYPPKYSTP
                     PSTSSDQAPNNGLFTGL"
     exon            450..884
                     /gene="Mon1b"
                     /gene_synonym="RGD1309977"
                     /inference="alignment:Splign:2.1.0"
     exon            885..1704
                     /gene="Mon1b"
                     /gene_synonym="RGD1309977"
                     /inference="alignment:Splign:2.1.0"
     exon            1705..1852
                     /gene="Mon1b"
                     /gene_synonym="RGD1309977"
                     /inference="alignment:Splign:2.1.0"
     exon            1853..3368
                     /gene="Mon1b"
                     /gene_synonym="RGD1309977"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acaccaggaa gtgtggtgcc gcggcggctc ctggaagtgt tgctgtccac ccggtggaga
       61 taggaggttg aaacaggtgt taatgtctcg tgtttgcgga agcccagcgg agcgtcaccc
      121 gtccgaaagt gtcggagggt gcaagtgttt ggtcatgttt ttgaatgtcg cgatctgtcg
      181 aaaaccgtag gggaaagcgc actaggaatg catccagggg gtctgactcc ctgaaggctt
      241 ttaagaagtt ttctgttgct gcccatcacc ctcgattccc cttctctcca gggatgtgca
      301 gatggagacc ggaggagata atgctgtccc agcccccggg ggcgtggagg acttggtgga
      361 cacgcagttc cccagagagg aggctggaga cagtgaagag gttcactcaa gcacgctgga
      421 tcccggagat ggggaaccgg aggacacagg atccaagacc aaggaccagc catccagcct
      481 cctatcacct ttgcctcagg ctgaggcccc atcaagcact tgtgagcact ggaaaacggc
      541 agcttcagac agcagtccca ctggagaacc tcagaggagc tctgagggtc agggagaaga
      601 ccccagtgat ggagacccca atgatgggga ccccagtgat ggggatccca atgatgggga
      661 ccccaatgat ggggacccca gtgatgggga tcccaatgat ggggacccca gtgacgagga
      721 ctggcgcagc caacggaagc acgtgttcgt gctgagtgag gcgggcaagc ccatctactc
      781 acggtatggt agtgtggagg cactgtcggc caccatgggt gtgatgacag ccctggtgtc
      841 cttcgtgcag agtgcaggag atgccatccg tgccatctat gctgaggacc acaagctggt
      901 gttcctgcag cagggacctc tcctgctggt ggctgtttcc cggactccac agtctgcagc
      961 acaactacga ggtgagctgc ttgcagtaca cgcacaaatt gtgagcacac taacgcgtgc
     1021 aagcgtggcc cgcatcttcg cacataagca gaactatgac ctacgtcgcc tgctggctgg
     1081 ctcagagcgt acactggacc ggctcctgga cagtgtggag caagacccag gcgccctgct
     1141 cctgggtgcc gtgcgctgtg tgcctctggc ccgtccactg cgggatgccc tgggcacact
     1201 actgcggcgc tgtacagccc caggcctggc cttgtcagtg ctggctgttg gcggtcgact
     1261 gataacggca gcccaagaga ggaatgtgct ggccgagtgc cggctggacc cagcggatct
     1321 acagttgctg cttgactggg tgggtgcacc agccttcgcg gcaggggagg cctgggcacc
     1381 tgtgtgcctg cctcgcttta acccagacgg tttcttctat gcctatgtgg ctcgcctgga
     1441 ttccatgccc gtctgcctgc tgctgcttgg taccaaccgt gaagccttcc atgccatggc
     1501 cgcctgccgg cgcttagtag aagatgggat gcacaacctt ggtgccctgc gcactcttgg
     1561 ggaggctgcc agcttctcca atggcccggc agccaatgcc cctgcctaca gtgtgcaggc
     1621 tgtgggagca cctggcctcc gacattttct ctataagcca ctggacatcc ctgaacagca
     1681 ccggcagctg ccacagttta ccagtcctga gctagaggcc ccatacagca gagaggagga
     1741 gcgacagcga ctgtccgacc tgtatcaccg cctgcatgct cgcctccata gcacctcccg
     1801 gcccctgcgc ctcatttacc acgtggctga gaaggagacg ctgctggctt gggtcacctc
     1861 caagtttgag ctctacactt gcctcagccc cctggtaacc aaggctgctg ccatcttagt
     1921 agtgacgaag ctcttgcgct gggtaaggaa ggaagaggac cggcttttca tccgttaccc
     1981 acccaaatac tccacacccc cttccacctc ctcggaccag gcccccaaca atggcctgtt
     2041 cacaggactc tgaatgactg cgggagtgac cacatttggc ttctacattc tgtgtctact
     2101 ctggaaatgt gggtagaggc ctgtgtgggg ctggtcccca tctccctggg caggttggca
     2161 agatgtcagg gtttgcccac aaatgggaga agggtaacag cagccagggg cacaggttgc
     2221 tttttgaacc ccctcgtgca cctccacatc taggaaagcg ggactcttcc tctgccctct
     2281 gcctcacctc cctaactagc ctgaatgcct gtcaccagct gtctccgcca ggcctctctg
     2341 agcagcacaa gttgctacca catccatctt ccaaacagac ctgaggctgg gctgaggctg
     2401 tcctcagggt agaggtgggt aacccacaag ggctctagaa tttggaatgc aggcctagcc
     2461 tgtgcttgaa accagcctat gggtgtttaa aaacatacaa aacaaaacaa aacaaaaact
     2521 gtacagaaag ggcctaaagc tgaatccctc aagacatccc tctgtccttc atgccccccc
     2581 ccccatcatt tttccttccc ctactttaaa gcaaacaaaa aacctccaaa cagatccaag
     2641 ccccaccatg ttggactgtt tcttactcgc ataagaaggt ggcatcccgc acccaactgt
     2701 gtaaaacacc gcctgacttg tccatgggcc aggatgcagc tttgtgaaga tgctcttagc
     2761 cgctaaagcg attactcacg aaaggattta actttcttct aaacctttta gtggacatct
     2821 ataaagggac aggggttggg aatgcattgt gctgctgccc agcacgaaca cgtttgtcag
     2881 gatattggcc gcttgcagta acgacctaaa gaagagccct tgaagagctc gtgctcacaa
     2941 cccacctcaa ctgctcacta cctattccag cctgttttag agacagagcc gtgtggttgc
     3001 gcgcgcatgc gtgaaaacgc aacctagcgt ttgctccaag cagatccctg tgtcacccta
     3061 acccctggtt tcctacaatg tctgcagtgg cgcgcgctgc cgttccctgc tgtttctttt
     3121 ccgaggcaca tgcgcacata cctcacgctg ggaaatggct gcggaactgg agcctttgaa
     3181 ggcggagtgg ctgggagctg agaaagctga agacaccgga ggtagtgagg gcggacaggg
     3241 tagatgggac agaggcttcg gctcatgata ataattgaga attttttaga aaaaaaagtt
     3301 tttagcctat tgaaacttgt aacttccaca aagtggaaat aaagaacatg cgtgttctca
     3361 tcacctaa
//
