LOCUS       NM_001106799            1597 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus matrix metallopeptidase 27 (Mmp27), mRNA.
ACCESSION   NM_001106799 XM_001067584 XM_235795
VERSION     NM_001106799.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1597)
  AUTHORS   Cominelli A, Halbout M, N'Kuli F, Lemoine P, Courtoy PJ, Marbaix E,
            Tyteca D and Henriet P.
  TITLE     A unique C-terminal domain allows retention of matrix
            metalloproteinase-27 in the endoplasmic reticulum
  JOURNAL   Traffic 15 (4), 401-417 (2014)
   PUBMED   24548619
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473993.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_235795.3, XM_001067584.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN06621351,
                              SAMN09345238 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q11"
     gene            1..1597
                     /gene="Mmp27"
                     /note="matrix metallopeptidase 27"
                     /db_xref="GeneID:300340"
                     /db_xref="RGD:1306642"
     exon            1..140
                     /gene="Mmp27"
                     /inference="alignment:Splign:2.1.0"
     CDS             39..1574
                     /gene="Mmp27"
                     /note="matrix metalloproteinase 27"
                     /codon_start=1
                     /product="matrix metalloproteinase-27 precursor"
                     /protein_id="NP_001100269.1"
                     /db_xref="GeneID:300340"
                     /db_xref="RGD:1306642"
                     /translation="MKCLLPLMVNFITLSSAFLPDRKDKNEENNQLAQAYLNQFYSLE
                     IEGSHLVQSKNRSLLDGKLQEMQAFFGLTVTGKLDSDTLEIMKVPRCGVPDVGQYGYT
                     LPGWRKYNLTYRIMNYTPDMTHADVDEAIQKALQVWSKVTPLMFTRISKGVADIMIAF
                     RTRVHGWCPRHFDGPLGVLGHAFPPGLGLGGDTHFDEDETWTTGDGEGFNLFLVAAHE
                     FGHSLGLSHSSDQTALMFPNYVSLDPNKYPLSQDDINGIQSIYGSPSKVPTKPNGNPV
                     PCACEPNLTFDAVTTFRREIMFLKGRHLWRVYSDITGAEFEFIDSFWPSLPADLQAAY
                     ESPRDEVLVFKDENFWVIRGNSVLPGYPKSIHTLGFPRRVKKIDAAVCDHDTKKTFFF
                     VGIWCWRYDEMAQAMDRGFPQRIMKRFPGIRLRVDAVFQRNGFFYFFRGSRQFEYDMK
                     AKNITQVMKTNTWFLCNEPLNSSSNVSVEGKAHSIGTVIFHHKSASLLSFSIVHVLTK
                     AYS"
     exon            141..379
                     /gene="Mmp27"
                     /inference="alignment:Splign:2.1.0"
     exon            380..528
                     /gene="Mmp27"
                     /inference="alignment:Splign:2.1.0"
     exon            529..660
                     /gene="Mmp27"
                     /inference="alignment:Splign:2.1.0"
     exon            661..822
                     /gene="Mmp27"
                     /inference="alignment:Splign:2.1.0"
     exon            823..943
                     /gene="Mmp27"
                     /inference="alignment:Splign:2.1.0"
     exon            944..1074
                     /gene="Mmp27"
                     /inference="alignment:Splign:2.1.0"
     exon            1075..1234
                     /gene="Mmp27"
                     /inference="alignment:Splign:2.1.0"
     exon            1235..1338
                     /gene="Mmp27"
                     /inference="alignment:Splign:2.1.0"
     exon            1339..1597
                     /gene="Mmp27"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 catacaaaca gggacaggct ctaactgaag agacaggaat gaagtgcctt ctgcctctga
       61 tggttaattt tataacactt tcctctgcat ttcttccaga cagaaaggac aaaaatgagg
      121 agaacaatca actggcccag gcatatctca accagttcta ctcgcttgaa atagaaggga
      181 gtcatcttgt ccaaagcaag aacaggagtc tcttagatgg aaaacttcag gaaatgcagg
      241 ccttttttgg attgacagtg acgggaaagc tggattcaga cactctggag atcatgaagg
      301 tgcccaggtg tggggtgccg gacgtggggc aatatggtta caccctccct gggtggagaa
      361 aatacaacct tacatacagg ataatgaatt acactcctga tatgacacac gctgatgtgg
      421 atgaggctat tcagaaagct ctacaagttt ggagcaaggt cactccactg atgttcacca
      481 ggatatccaa gggggttgca gatataatga tagcattcag gacaagagtc catggctggt
      541 gtcctcgtca ctttgatggt cctctgggag tccttggcca tgcctttcct cctggtctgg
      601 gtcttggtgg tgatacccac tttgacgaag atgaaacatg gacaaccggg gatggggaag
      661 ggttcaactt gtttctcgtg gctgctcatg aatttggtca ctctctgggg ctctcccact
      721 ccagtgatca aacagccttg atgtttccta attatgtctc cctggatcct aacaaatacc
      781 cactttctca ggatgatatt aatgggatcc agtccatcta tggaagtccg tctaaggtac
      841 ccaccaagcc aaatggaaac cctgtcccct gcgcttgtga gcccaacttg acttttgatg
      901 ctgtcactac cttccgcagg gaaatcatgt tccttaaagg caggcaccta tggagggtct
      961 actctgatat tactggtgct gagtttgagt ttattgattc cttctggcca tctctgccag
     1021 ctgatcttca agctgcctat gaaagcccca gagatgaggt ccttgttttt aaagatgaga
     1081 atttctgggt gatcaggggg aattctgtct tgcctggtta ccccaaatct atccacacac
     1141 tcgggtttcc aagacgtgtg aagaaaattg atgcagccgt ctgtgatcat gacacaaaga
     1201 aaaccttctt ttttgttggc atctggtgct ggaggtatga tgagatggcg caagcaatgg
     1261 acagaggatt cccacagagg ataatgaagc gcttcccagg aattcgcctc cgtgtagatg
     1321 ctgtcttcca acgtaacgga ttcttctatt tcttccgtgg gtcgaggcaa tttgagtacg
     1381 acatgaaggc aaaaaatatc acccaagtga tgaaaaccaa cacttggttc ctgtgcaatg
     1441 aaccattaaa ctcatcatcc aatgtcagtg tcgaaggaaa agcacattca attggcacag
     1501 tgatattcca tcataaaagt gcaagcttgc tcagtttcag cattgttcat gtgctgacaa
     1561 aagcatatag ttaacaataa atgccacgaa taatgaa
//
