LOCUS       XM_039087060            3737 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus matrix metallopeptidase 25 (Mmp25),
            transcript variant X1, mRNA.
ACCESSION   XM_039087060
VERSION     XM_039087060.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 17, 2024 this sequence was replaced by
            NM_001427286.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3737
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3737
                     /gene="Mmp25"
                     /note="matrix metallopeptidase 25; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 62 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:302963"
                     /db_xref="RGD:1308298"
     CDS             399..2246
                     /gene="Mmp25"
                     /codon_start=1
                     /product="matrix metalloproteinase-25 isoform X1"
                     /protein_id="XP_038942988.1"
                     /db_xref="GeneID:302963"
                     /db_xref="RGD:1308298"
                     /translation="MCLPGSQISPAHLYYLVSAPCRAGSLTSSIPPGRRESGLFRMPL
                     RSVQAERILRLQALGLPLLVLLLVLLQPVRAQNLRAQDVSMGVDWLTRYGYLPPADPV
                     HAQMQSLGKLQDAIKVMQRFAGLPETGQMDPITIATMHKPRCSLPDILGPAGLVRRRR
                     RYTLSGSVWKKRTLTWSIQSFSQSSRLSQSVVRTLVSYALDVWAVASGLTFQEVDSQY
                     QEPDIVIHFSRAYHQDSYPFDGPGGTLAHAFFPGEHPISGDTHFDDEETWTFGSTDGE
                     GTDLFAVAVHEFGHALGLGHSSAPDSIMRPFYQGPVGDPGTYRLSQDDRDGLQQLYGR
                     VSQTPNDKPTRKPLVPPPQPPVMPPDSPSTPVPDRCKGNFDAVANIRGEIFFFKGPWF
                     WRLQPSGQLVSPRPAGLHRFWEGLPNDVRVIQAAYARPQDGRIILFSGPQFWVFQERQ
                     LQGAARPLVEFGLPPGEEVDAVFSWPFNGKTYLIRGQKYWRYDEVAGSPDPDYPRPLS
                     LWEGAPFAPDDVTISNTGDTYFFKGTHSWRFAKGSVKSESDSPQPIGPTWLDCPAPNS
                     DPQVPSPPKTTPETRSCDCHCELNQTSEQLSSTFLLPLLPLLAGAIFSC"
ORIGIN      
        1 tctgggaaca gaaactttta gactgaggcg gagaagtagg ggacatgtca gccgacttgc
       61 cccacagtag ttaacccttg aggtcatagg agagtccctg cgtgcgggcg gggaacagga
      121 gaacccctgg cccttctctg ggacattggc ttcggaagat tggactactt cccctactgc
      181 gcccttaacg cttctctggg tgagccccac cccattcagg ctcccactag aagactgggc
      241 agttggcgcc tcgcccaggc cggacaagca cctggaggag accggagtag gggacctcat
      301 tgccagacct ctggtccttc ctgcgccttc tccacgctcc caggatccct cactccccat
      361 ccccacctcg accctcggct atcgctgctc agcccgtgat gtgcctccca ggatcccaga
      421 tttctcctgc ccatctctac taccttgtgt cggctccctg ccgcgccggg tccctgacct
      481 cctcgatccc tccagggcgg cgggagtcag ggctctttcg aatgcccctg cggtccgtcc
      541 aagctgaacg catcctgagg ctgcaagctc tgggtctccc gttactggtg cttctgttgg
      601 ttctgctgca gccggtgcga gctcagaatc tcagggctca ggacgtgagc atgggcgtgg
      661 actggctgac tcgctatggc tacctgccac cggcggatcc tgtccacgcc cagatgcaga
      721 gtcttgggaa gctgcaggat gcgatcaaag tcatgcagag atttgctgga ctacctgaga
      781 ctggacaaat ggacccaata acaatagcca ccatgcacaa gccccggtgc tccctgcctg
      841 atatcctggg gcctgctggg ctggtcaggc gccggcgtcg ctatactctg agtggcagcg
      901 tgtggaagaa gcgcaccctg acgtggagta tccagtcctt ctctcagagc tcccggttga
      961 gccagtctgt tgtccggacc cttgtgagct atgccctaga tgtctgggct gttgcgtcag
     1021 gcctaacgtt ccaagaggtg gattctcagt accaggagcc tgacatcgtt atccactttt
     1081 cccgggccta ccaccaagac agttacccct ttgacgggcc tggtggcacg ctggctcacg
     1141 ccttcttccc tggagaacac cccatctctg gagacactca ctttgacgat gaagagacct
     1201 ggacttttgg gtcaacagat ggtgaaggaa ccgacctatt tgcagtagca gttcatgaat
     1261 ttggccatgc tctaggcctt ggccactctt ctgcacccga ctccattatg aggcccttct
     1321 accagggccc ggtgggtgac cctggcacat accgcttgtc ccaggatgac cgtgatggat
     1381 tgcagcagct ctatgggaga gtgtcccaaa ctccgaatga caagcccaca aggaaacctc
     1441 tggtaccacc tccccagcct ccagtcatgc cccctgacag cccctccaca cctgtgcctg
     1501 atcgatgtaa gggcaatttt gatgctgttg ccaacatccg aggggaaatt ttcttcttca
     1561 aaggcccctg gttctggcgc ctccaaccct caggacagct ggtatcaccc cgccctgctg
     1621 ggttgcaccg cttttgggag gggctgccaa acgatgtgag ggtcattcag gctgcctatg
     1681 cccgacccca agatggccga atcatcctct tcagcggccc gcagttctgg gtgttccagg
     1741 aacgacagct tcagggtgca gcgaggccac tggtagaatt tgggctgccc ccgggagaag
     1801 aagtggatgc tgtgttctca tggcctttca acggcaagac atacctgatc cgaggccaaa
     1861 agtactggcg gtatgacgaa gtggccggga gcccagaccc tgattaccca cgtcccctga
     1921 gtctttggga gggcgcgccc tttgccccag acgacgtcac catcagcaac acaggtgaca
     1981 cttacttttt caaaggcacc cattcctggc gctttgcgaa gggcagtgtc aaatctgagt
     2041 cagattcccc ccagcccatt gggcccacgt ggctggattg ccctgccccg aactctgatc
     2101 ctcaagtccc cagtcccccg aaaacgacac ccgaaaccag aagctgtgat tgccactgcg
     2161 aactcaatca aacctcggag cagctgtcat cgaccttcct gctgcccctc ctgcccctat
     2221 tggctggagc catcttttct tgctgaaacc tggtcctacc ttgcagactt cctatacaga
     2281 aggaagacag agtctccctc agctggacct agtgtagggt ctagggatgc tgtgaatcct
     2341 cacgatctgt ttccacgtgc acagagctga tcgcattcct aaaagaagcc cgcggacgca
     2401 tgagctttcc ttcctgagct tggtttctgt taaggccgag ggagctgtgg ccatagtgag
     2461 ggtggccgcc gccagggggc ggtgtgcacc aagaagggcc ggccggccgc agccactgga
     2521 acccatgaga attgcagctt ggacacacag tgcgccaccc tgtcccattg ctccttaaac
     2581 caaggcaaca ccacaccaag gttgtgtgct gacttctgct gaacagatgg ctttctggga
     2641 atccccactc ctctgattct ccacaactgg tcacactggt cacagtgggt tggtgactat
     2701 accctgacta gatgtgttaa acaggaccag gacctcctgt agcctctgaa tgtgttcctg
     2761 aaccttccta ccatgttcta ctccctctgt gtccctttaa agtcactgcc acaggggagg
     2821 gatgtaagcc caagcaccgt cacctcctct gagggtgtgt gtcgagtctt ggctgacttc
     2881 agtgttgatg tagatggaat ttctccctgt ttggcccaga tgatctcatt ttaggtcacc
     2941 cttatcccag aacacaacct ggggtgatca ccctgaattc aggattgccc gggtcagttg
     3001 gaagggatct tatgataccc gtctctgtcg ccaattgaag tggccatagc ttctatctta
     3061 ggacagtttg gtttccatct gcacagtgcg gctgaggctg gctgaggggg ctgaaggttc
     3121 tggatcgtgg gtgtaggact cggatcctct acaagggcag cttttaattg ctgagccagg
     3181 gcccaagccc ctgccattgc cttcctagca ctcccagggt gcccaatgat atgtggtgag
     3241 cagtgaaaaa atctgaggta gcttccttca caccaacttc cccacagatt caggacctag
     3301 atcatcgctt ctagaatagt ccacatcaga atcatctcac gggatttttt tttttccgag
     3361 gcagggtttt tctctgtagc cctggctgtc ctgaaactca ctctgtagac caggctggcc
     3421 tcaaactcag agatctgctt ttctcttcct cctgagtgct gagttcaaag gtgtgtgcca
     3481 ccactgccca gcatctcatg agtttaagaa tgaagttccc cttctcttac cctgaatcct
     3541 catttaggaa tgaatgcagt caagaggcat agacagtttg agtagtttat ttaataaggc
     3601 aaaagaacca agcttgggct ggagaggtgg ctcagcggtt aagagccctg atggctcttc
     3661 caaaggtcct gagttcaatt cccagcaacc acatggtgac tcacaatcat ctgtaatgag
     3721 atctggtgcc gccttct
//
