LOCUS       XM_039082796            1448 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus matrix metallopeptidase 1b
            (interstitial collagenase) (Mmp1b), mRNA.
ACCESSION   XM_039082796
VERSION     XM_039082796.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082796.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1448
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1448
                     /gene="Mmp1b"
                     /note="matrix metallopeptidase 1b (interstitial
                     collagenase); Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 80% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:300338"
                     /db_xref="RGD:1306843"
     CDS             1..1383
                     /gene="Mmp1b"
                     /codon_start=1
                     /product="interstitial collagenase B"
                     /protein_id="XP_038938724.1"
                     /db_xref="GeneID:300338"
                     /db_xref="RGD:1306843"
                     /translation="MLSLPLLLLLLATSSYSLPVSQDGAQQNVETVWKYLENLGEDMQ
                     AKNVDVKEVMDEKLRQMEQSFGLKVTGNSNSETPSAIKTPMCGVPDVTPYSITYNNTQ
                     WTKTHLTYSILNYTPHLPRKVVEDAIERAFKVWSDVTPLTFERVFEEEGDIVLSFHQG
                     DHGDLYSFNGSKSHFAHAFPPGPGLGGDVHYDLDETWTNNSDNFNLFYVTAHELGHSL
                     GLSHSKDEEALMFPSYTWNNKDFVLNQDDISKIQALYGPSPNPIQPTDATPDPCSSGL
                     TFDAITTYRGEVIFFKDRFYIRVISFLPKPLINVIDLIWPDLPSKIDAAYEASLVDEL
                     RFFKGNKVWAVQEQNVLRGFPTDIHSFFGFPSSVTHIDAAVCEEETGKTYFFVDNMYW
                     RYDENTRSMDPGYPRLIAEDFPGIDDKVDDVFQKEDNFYFFHQSTQHIFNLQTRKIVD
                     APDSSSWFNC"
ORIGIN      
        1 atgcttagcc ttcctttgct gttgcttctc ttggctacca gctcatacag tctccctgtg
       61 tctcaggatg gagcccagca gaatgtggag acagtctgga aatacctgga aaacttgggt
      121 gaagacatgc aagctaaaaa cgtggatgtc aaggaggtga tggatgaaaa gctgagacaa
      181 atggagcagt catttgggct gaaagtgaca ggaaattcaa attctgaaac cccgagtgct
      241 atcaagacac ccatgtgtgg ggtgcctgat gtgaccccat attcaattac ttataacaat
      301 actcagtgga ccaaaacaca tctgacttac agcattttaa actacacacc acatttgcca
      361 agaaaagttg tggaagatgc cattgagaga gcctttaaag tctggagtga tgtgacacca
      421 ctaacattcg aaagggtctt tgaggaggaa ggagatattg tgctctcctt ccaccaagga
      481 gaccatggtg acctttactc atttaatgga tctaaatccc actttgccca cgcttttccg
      541 ccaggcccag gtttgggggg cgatgttcat tatgatctgg atgagacgtg gaccaacaac
      601 agtgacaatt tcaacttgtt ctacgttaca gctcatgaac tgggccactc ccttggactc
      661 tcccattcta aggatgaaga ggcactaatg ttccccagtt acacatggaa caataaagac
      721 tttgtactaa accaggacga tattagtaaa atccaggctt tatatgggcc ttccccaaat
      781 cctatccagc caacagatgc cacaccagat ccatgtagta gtggtctgac ctttgatgct
      841 ataacgacat atcgggggga ggtgatattc tttaaagaca ggttctacat tcgtgtaatt
      901 agcttcctgc caaaaccttt gatcaatgtg atagatctta tctggccaga tttgccaagt
      961 aaaattgatg ctgcttatga agctagtttg gtagatgagc tccgcttttt caaaggcaat
     1021 aaagtctggg ctgttcagga acagaatgta ctgagaggat tccccacaga catccacagc
     1081 ttctttggct tccctagcag tgtgacacac attgacgctg ccgtttgtga ggaagagact
     1141 ggaaaaacat acttcttcgt tgacaacatg tactggaggt atgatgaaaa tacacggtcc
     1201 atggatccag gttaccctag attaatagca gaagactttc ctggaattga tgataaagtt
     1261 gatgatgttt tccagaaaga ggataatttc tatttctttc accaatcaac tcaacacatt
     1321 tttaacctcc aaacaagaaa aattgttgat gcccctgatt ctagttcctg gttcaactgc
     1381 taaaacattg gcgacccatt accaacttaa tgaacataca tattccataa tcttaaagaa
     1441 gatatttt
//
