LOCUS       NM_001105925            3509 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus matrix metallopeptidase 17 (Mmp17), mRNA.
ACCESSION   NM_001105925 XM_001072688 XM_008769178 XM_239639
VERSION     NM_001105925.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3509)
  AUTHORS   Wang,X., Sumida,H. and Cyster,J.G.
  TITLE     GPR18 is required for a normal CD8alphaalpha intestinal
            intraepithelial lymphocyte compartment
  JOURNAL   J Exp Med 211 (12), 2351-2359 (2014)
   PUBMED   25348153
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473973.1.
            
            On or before Aug 24, 2014 this sequence version replaced
            XM_008769178.1, XM_001072688.1, XM_239639.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760393,
                              SAMEA5760396 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3509
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q13"
     gene            1..3509
                     /gene="Mmp17"
                     /note="matrix metallopeptidase 17"
                     /db_xref="GeneID:288626"
                     /db_xref="RGD:1311541"
     exon            1..279
                     /gene="Mmp17"
                     /inference="alignment:Splign:2.1.0"
     CDS             124..1887
                     /gene="Mmp17"
                     /note="matrix metalloproteinase 17"
                     /codon_start=1
                     /product="matrix metalloproteinase-17 precursor"
                     /protein_id="NP_001099395.1"
                     /db_xref="GeneID:288626"
                     /db_xref="RGD:1311541"
                     /translation="MGRRPRGPGSPRGPGPPRPGPGLPPLLLMLALAAHGGCAAPAPR
                     AEDLSLGVEWLSKFGYLPPADPATGQLQTQEELSKAITAMQQFGGLETTGILDEATLA
                     LMKTPRCSLPDLPLGAQSRRRRQTPLPTKWSKRNLSWRVRTFPRDSPLGRDTVRALMY
                     YALKVWSDITPLNFHEVAGNMADIQIDFSKADHNDGYPFDGPGGTVAHAFFPGDHHTA
                     GDTHFDDDEAWTFRSSDAHGMDLFAVAVHEFGHAIGLSHVAAPSSIMQPYYQGPVGDP
                     LRYGLPYEDRVRVWQLYGVRESVSPTAQLDTPEPEEPPLLPEPPNNRSSTPPQKDVPH
                     RCTAHFDAVAQIRGEAFFFKGKYFWRLTRDRHLVSLQPAQMHRFWRGLPLHLDSVDAV
                     YERTSDHKIVFFKGDRYWVFKDNNVEEGYPRPVSDFSLPPGGIDAVFSWAHNDRTYFF
                     KDQLYWRYDDHTRRMDPGYPAQGPLWRGVPSVLDDAMRWSDGASYFFRGQEYWKVLDG
                     ELEAAPGYPQSTARDWLVCGEQLADAEDVGPGPQGRSGAQDGLAVCSCTSDAHRSALP
                     PLLLLPPLLWGLWTSVSSTAS"
     exon            280..412
                     /gene="Mmp17"
                     /inference="alignment:Splign:2.1.0"
     exon            413..542
                     /gene="Mmp17"
                     /inference="alignment:Splign:2.1.0"
     exon            543..826
                     /gene="Mmp17"
                     /inference="alignment:Splign:2.1.0"
     exon            827..1003
                     /gene="Mmp17"
                     /inference="alignment:Splign:2.1.0"
     exon            1004..1103
                     /gene="Mmp17"
                     /inference="alignment:Splign:2.1.0"
     exon            1104..1186
                     /gene="Mmp17"
                     /inference="alignment:Splign:2.1.0"
     exon            1187..1339
                     /gene="Mmp17"
                     /inference="alignment:Splign:2.1.0"
     exon            1340..1597
                     /gene="Mmp17"
                     /inference="alignment:Splign:2.1.0"
     exon            1598..3509
                     /gene="Mmp17"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaggcgggcg ggcgcgcggc tcagtcccgc ggagcggagc ggtgcgggcg cggagccgag
       61 cgaggcgcgg agctagctgc tggctagtgc ggagaccctc gccacccggc ctgggatagc
      121 gggatgggac gccgcccgcg gggacctgga tccccccggg gacctggccc tccacgaccc
      181 gggcccgggt tgccgccgct gttgcttatg ctggcgctgg cggcccatgg gggctgcgca
      241 gcgcccgcgc cccgcgcgga ggacctcagc cttggggtgg agtggctaag caagtttggc
      301 tacctcccac ctgcagaccc ggcgacaggg cagctacaga cacaggagga actgtccaag
      361 gctattactg ccatgcaaca gtttggcggt ctggagacca ctggcatcct ggatgaggcc
      421 actctggcac tgatgaagac ccctcgctgc tcccttccgg acctgcccct tggggcccaa
      481 tcgagaagga ggcgtcagac tccgctaccc accaaatgga gcaagaggaa cctttcttgg
      541 agggtccgga cattcccacg ggactcaccc ctgggccggg atactgtgcg tgcactcatg
      601 tactacgccc tcaaagtctg gagtgacatc acacccttga acttccacga ggtagcgggc
      661 aacatggcgg acatccagat cgacttctcc aaggctgacc acaacgacgg ctaccccttc
      721 gatggccccg gtggcacagt ggcccatgca ttcttccctg gtgaccacca cacagcaggg
      781 gacacccact ttgatgacga tgaggcgtgg accttccgct cctcagatgc ccacgggatg
      841 gacctgtttg cagtggctgt ccacgagttc ggtcatgcca tcggtctgag ccatgtcgct
      901 gccccaagct ccatcatgca gccatactac cagggccccg tgggtgaccc gctacgctat
      961 gggcttccct acgaggacag ggtgcgtgtc tggcagttgt acggtgtgcg ggagtccgtg
     1021 tcccctactg cccagctgga taccccagaa cctgaggaac cacccctcct gccagagccc
     1081 cccaacaatc ggtctagcac tccgccacag aaggatgtgc ctcacaggtg cactgctcac
     1141 ttcgatgctg tggcccagat tcgtggtgaa gcattcttct tcaaaggcaa gtatttctgg
     1201 aggctgaccc gggacaggca cttggtgtcc ctgcagcccg ctcaaatgca tcgcttctgg
     1261 cggggtctgc cgctgcacct ggacagtgtg gacgcggtgt atgagcgtac cagtgaccac
     1321 aagattgtct tcttcaaagg agacagatac tgggtgttta aggacaacaa tgtagaggaa
     1381 gggtacccac gacccgtctc cgacttcagc ctcccgccag gtggcatcga cgccgtcttc
     1441 tcctgggccc acaatgacag gacttatttc tttaaggacc agctgtactg gcgctatgac
     1501 gaccacacac ggcgcatgga ccctggctac cctgcccagg gccccctgtg gagaggtgtc
     1561 cccagcgtgc tggatgatgc catgcgctgg tctgacggtg catcctattt cttccgaggc
     1621 caggagtact ggaaagtgct ggatggtgag ctagaggcag cccctgggta ccctcagtct
     1681 acagcccggg actggctggt atgtggtgag cagctggcgg atgcggagga cgtaggcccc
     1741 ggaccgcaag gccgcagcgg ggcccaggat ggtctggcag tatgttcctg cacttcagac
     1801 gcacacaggt ctgcactgcc acctctgctg ctgctgccac cactgctgtg gggcctatgg
     1861 acctcagtct ccagcacggc atcctgaggg cagtgctagc cttgcggatc aaggagccaa
     1921 ggggggcagg gacacactgg ccagtagtca gcaggacttg tgctccaagc ccccggtccc
     1981 tcgctccttc cttccttcct tccactaaac ccaggggtgc tgtgccatct gctggagtgg
     2041 tctccagctg ggacaggccg tcctaccaaa cggcatccat gcacctttcc tacccggagc
     2101 agccataggc aggcgctcct tccctcttct gcacatcatg ctgcttcgtt gcacctcgcc
     2161 gggctaccca cgcccagctg tcacaacccc aggatgcctt gtctgcacct gagcggctct
     2221 gactggcatc tgcacttggg ctgatgggga caaatggggg gggacagttc ctcgtggtgt
     2281 ccataggggc caccgtgcct gtttcacaag tgagagaggt gaagcccccc cccccccgat
     2341 ggggaacgtg gtcggagaag ggcacctacc cagaagtctg atccactgtc gtttgcagca
     2401 gccatatctg ctggtacagg ggaccagtca cactcaggat ctgcccacag gtacccagat
     2461 gctggtggcc agggatcccg gtccaaccat caggagtaca gccccctctc ctcatcctag
     2521 acaggctaga cgtggaggct gtgtcctgtt atcttcctca ctgtggccag gagagcactg
     2581 tgggtctccc tcgggtgctg ttgattggga gagggggtgc ccatgaagac ttctcttcat
     2641 ccatcagtac ctattgcttc agcaggatgc cctgtgggta tagttctgga ctcagacccc
     2701 acagctcaga ctcagagcta tcccctcccc agctgtggag gggctttaac acctggaata
     2761 taaaagtggg tgttcagtta gggaagaagg atcattgggg gaggacaggg ataacagtgt
     2821 cagggccctt gggggtcaca acagtgtcac cgccggactt ggagatgtgg gaatacgaat
     2881 tgctgctctg ggtgccaaac ctccatggtc cagaaagggc tagatggggt gatgaactcc
     2941 agggaggaac cgccaagttc aaaggttctg ggatgagatg ggtctaagga acagggccac
     3001 gggtgtaggc ttggctgcag ggtgagcagt ttctgtcatt gggcacgaga tgaaaattag
     3061 tgatcacact tacatataca cacacacccc ctccccactg gccctgtccc atctcaggta
     3121 aaaaaaaaaa aaaaataggc ttctacatac cccaggccag gtttgagtgt tgtcaggatg
     3181 agcggcagcc aacagggcct gggtttctac ccttctccct ctcccaagcc tggccacagc
     3241 atccacgcac ctgtcagact aggcaggaca gagttggggg tgggggggtc tgaggtttcc
     3301 atcatggaag ccactctgcc ctcacatcaa agcacgttcc taagatgtcc catgctgtcc
     3361 accagctgtc ctgtacggta acagggaaga ccctaagagt ctttgtcacg tagcgctgaa
     3421 agccaggccc gcaggctgga gctgtctaga tgctggtgtc tcactcattt taaaacccaa
     3481 actcttaata aaagttttct acactggag
//
